Information for 5-TYYATCATWGCAR (Motif 6)

A C G T A G C T A G C T C G T A A C G T A G T C C G T A A C G T C G A T T A C G A G T C C G T A C T A G
Reverse Opposite:
A G T C A C G T A C T G A G T C C G T A C G T A A C G T A C T G C G T A A C G T C T G A C T G A G T C A
p-value:1e-13
log p-value:-3.131e+01
Information Content per bp:1.871
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.83%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets53.2 +/- 26.9bp
Average Position of motif in Background44.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:1
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----TYYATCATWGCAR
GYCATCMATCAT-----
 A C G T A C G T A C G T A C G T A C G T A G C T A G C T C G T A A C G T A G T C C G T A A C G T C G A T T A C G A G T C C G T A C T A G
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T A C G T A C G T A C G T A C G T A C G T

PB0055.1_Rfx4_1/Jaspar

Match Rank:2
Score:0.61
Offset:2
Orientation:forward strand
Alignment:TYYATCATWGCAR----
--TACCATAGCAACGGT
 A C G T A G C T A G C T C G T A A C G T A G T C C G T A A C G T C G A T T A C G A G T C C G T A C T A G A C G T A C G T A C G T A C G T
A C G T A C G T A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:3
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--TYYATCATWGCAR
ATTGCATCAT-----
 A C G T A C G T A C G T A G C T A G C T C G T A A C G T A G T C C G T A A C G T C G A T T A C G A G T C C G T A C T A G
T C G A G C A T A C G T C T A G G T A C T C G A G C A T T G A C T C G A A C G T A C G T A C G T A C G T A C G T A C G T

Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer

Match Rank:4
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--TYYATCATWGCAR
ATTGCATCAK-----
 A C G T A C G T A C G T A G C T A G C T C G T A A C G T A G T C C G T A A C G T C G A T T A C G A G T C C G T A C T A G
T C G A A C G T A C G T C T A G A G T C T C G A G C A T G T A C C T G A A C G T A C G T A C G T A C G T A C G T A C G T

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:5
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---TYYATCATWGCAR
TCATCAATCA------
 A C G T A C G T A C G T A C G T A G C T A G C T C G T A A C G T A G T C C G T A A C G T C G A T T A C G A G T C C G T A C T A G
G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

PB0054.1_Rfx3_1/Jaspar

Match Rank:6
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--TYYATCATWGCAR--------
TGTGACCCTTAGCAACCGATTAA
 A C G T A C G T A C G T A G C T A G C T C G T A A C G T A G T C C G T A A C G T C G A T T A C G A G T C C G T A C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:7
Score:0.57
Offset:1
Orientation:forward strand
Alignment:TYYATCATWGCAR
-AAATCACTGC--
 A C G T A G C T A G C T C G T A A C G T A G T C C G T A A C G T C G A T T A C G A G T C C G T A C T A G
A C G T T G C A C G T A G T C A A G C T A G T C G C T A T A G C C G A T C T A G G A T C A C G T A C G T

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:8
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:TYYATCATWGCAR
---GTCATN----
 A C G T A G C T A G C T C G T A A C G T A G T C C G T A A C G T C G A T T A C G A G T C C G T A C T A G
A C G T A C G T A C G T T C A G A C G T G A T C C G T A A G C T A T C G A C G T A C G T A C G T A C G T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:9
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----TYYATCATWGCAR
RGCCATYAATCA------
 A C G T A C G T A C G T A C G T A C G T A C G T A G C T A G C T C G T A A C G T A G T C C G T A A C G T C G A T T A C G A G T C C G T A C T A G
C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A A C G T A C G T A C G T A C G T A C G T A C G T

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:10
Score:0.55
Offset:2
Orientation:forward strand
Alignment:TYYATCATWGCAR----
--CCGCATAGCAACGGA
 A C G T A G C T A G C T C G T A A C G T A G T C C G T A A C G T C G A T T A C G A G T C C G T A C T A G A C G T A C G T A C G T A C G T
A C G T A C G T A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A