Information for 4-TTTTATKGGAACT (Motif 3)

A G C T C G A T A C G T A C G T C G T A A G C T A C T G C T A G A C T G G C T A C G T A A G T C C G A T
Reverse Opposite:
C G T A A C T G G A C T C A G T A G T C A G T C G T A C C T G A A C G T C G T A C G T A C G T A C T G A
p-value:1e-17
log p-value:-4.009e+01
Information Content per bp:1.837
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.53%
Number of Background Sequences with motif8.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets48.9 +/- 22.6bp
Average Position of motif in Background56.4 +/- 22.3bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXB13/MA0901.1/Jaspar

Match Rank:1
Score:0.83
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATKGGAACT
NTTTTATTGG----
 A C G T A G C T C G A T A C G T A C G T C G T A A G C T A C T G C T A G A C T G G C T A C G T A A G T C C G A T
C A T G C A G T C A G T C G A T G C A T C T G A G C A T C A G T C T A G A T C G A C G T A C G T A C G T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:2
Score:0.83
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATKGGAACT
NTTTTATTGG----
 A C G T A G C T C G A T A C G T A C G T C G T A A G C T A C T G C T A G A C T G G C T A C G T A A G T C C G A T
C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G A C G T A C G T A C G T A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:3
Score:0.83
Offset:0
Orientation:reverse strand
Alignment:TTTTATKGGAACT
TTTTATTRGN---
 A G C T C G A T A C G T A C G T C G T A A G C T A C T G C T A G A C T G G C T A C G T A A G T C C G A T
C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A A C G T A C G T A C G T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:4
Score:0.82
Offset:0
Orientation:forward strand
Alignment:TTTTATKGGAACT
TTTTATKRGG---
 A G C T C G A T A C G T A C G T C G T A A G C T A C T G C T A G A C T G G C T A C G T A A G T C C G A T
C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G A C G T A C G T A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:5
Score:0.81
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATKGGAACT
TTTTTATTGG----
 A C G T A G C T C G A T A C G T A C G T C G T A A G C T A C T G C T A G A C T G G C T A C G T A A G T C C G A T
C A G T A C G T A C G T C G A T C G A T C G T A C G A T C A G T T C A G A T C G A C G T A C G T A C G T A C G T

PH0078.1_Hoxd13/Jaspar

Match Rank:6
Score:0.80
Offset:-4
Orientation:reverse strand
Alignment:----TTTTATKGGAACT
NNANTTTTATTGGNNN-
 A C G T A C G T A C G T A C G T A G C T C G A T A C G T A C G T C G T A A G C T A C T G C T A G A C T G G C T A C G T A A G T C C G A T
C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G A C G T

PH0057.1_Hoxb13/Jaspar

Match Rank:7
Score:0.78
Offset:-4
Orientation:reverse strand
Alignment:----TTTTATKGGAACT
NNAATTTTATTGGNTN-
 A C G T A C G T A C G T A C G T A G C T C G A T A C G T A C G T C G T A A G C T A C T G C T A G A C T G G C T A C G T A A G T C C G A T
A T G C C T A G C G T A C G T A A C G T C G A T C G A T G C A T C T G A G A C T C A G T C T A G T A C G C A T G G A C T A C G T A C G T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:8
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:TTTTATKGGAACT
TTTAATTGCN---
 A G C T C G A T A C G T A C G T C G T A A G C T A C T G C T A G A C T G G C T A C G T A A G T C C G A T
C G A T A G C T C G A T G C T A C G T A G A C T C A G T C T A G T A G C A T G C A C G T A C G T A C G T

CDX1/MA0878.1/Jaspar

Match Rank:9
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:TTTTATKGGAACT
TTTTATTGC----
 A G C T C G A T A C G T A C G T C G T A A G C T A C T G C T A G A C T G G C T A C G T A A G T C C G A T
C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C A C G T A C G T A C G T A C G T

PH0075.1_Hoxd10/Jaspar

Match Rank:10
Score:0.73
Offset:-5
Orientation:reverse strand
Alignment:-----TTTTATKGGAACT
NTNAATTTTATTGNATT-
 A C G T A C G T A C G T A C G T A C G T A G C T C G A T A C G T A C G T C G T A A G C T A C T G C T A G A C T G G C T A C G T A A G T C C G A T
C G T A G C A T G C T A G C T A C T G A A G C T C G A T C G A T C G A T C T G A G C A T C A G T C T A G A G T C T G C A G A C T A C G T A C G T