Information for 6-STYTKYSYTGGCA (Motif 7)

A T C G A C G T A G C T A C G T A C G T A G T C A T C G A G C T A C G T A C T G A T C G A G T C C G T A
Reverse Opposite:
A C G T A C T G A T G C A G T C G T C A C T G A A T G C C T A G G T C A C G T A C T G A C G T A A T G C
p-value:1e-12
log p-value:-2.770e+01
Information Content per bp:1.822
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.96%
Number of Background Sequences with motif4.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets45.0 +/- 22.3bp
Average Position of motif in Background26.4 +/- 5.4bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.77
Offset:-3
Orientation:forward strand
Alignment:---STYTKYSYTGGCA
NNTGTTTATTTTGGCA
 A C G T A C G T A C G T A T C G A C G T A G C T A C G T A C G T A G T C A T C G A G C T A C G T A C T G A T C G A G T C C G T A
C G A T G A C T C G A T T C A G G A C T A C G T C A G T C T G A G A C T G A C T A G C T C G A T A C T G A T C G G T A C G C T A

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.75
Offset:6
Orientation:reverse strand
Alignment:STYTKYSYTGGCA-
------CTTGGCAA
 A T C G A C G T A G C T A C G T A C G T A G T C A T C G A G C T A C G T A C T G A T C G A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.74
Offset:6
Orientation:reverse strand
Alignment:STYTKYSYTGGCA--
------NTTGGCANN
 A T C G A C G T A G C T A C G T A C G T A G T C A T C G A G C T A C G T A C T G A T C G A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

NFIA/MA0670.1/Jaspar

Match Rank:4
Score:0.72
Offset:5
Orientation:reverse strand
Alignment:STYTKYSYTGGCA--
-----NNTTGGCANN
 A T C G A C G T A G C T A C G T A C G T A G T C A T C G A G C T A C G T A C T G A T C G A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.72
Offset:7
Orientation:forward strand
Alignment:STYTKYSYTGGCA
-------TTGGCA
 A T C G A C G T A G C T A C G T A C G T A G T C A T C G A G C T A C G T A C T G A T C G A G T C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A

Hic1/MA0739.1/Jaspar

Match Rank:6
Score:0.71
Offset:5
Orientation:reverse strand
Alignment:STYTKYSYTGGCA-
-----GGTTGGCAT
 A T C G A C G T A G C T A C G T A C G T A G T C A T C G A G C T A C G T A C T G A T C G A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T

HIC2/MA0738.1/Jaspar

Match Rank:7
Score:0.64
Offset:5
Orientation:reverse strand
Alignment:STYTKYSYTGGCA-
-----NGTGGGCAT
 A T C G A C G T A G C T A C G T A C G T A G T C A T C G A G C T A C G T A C T G A T C G A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T

PB0029.1_Hic1_1/Jaspar

Match Rank:8
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:STYTKYSYTGGCA----
-NGTAGGTTGGCATNNN
 A T C G A C G T A G C T A C G T A C G T A G T C A T C G A G C T A C G T A C T G A T C G A G T C C G T A A C G T A C G T A C G T A C G T
A C G T C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:9
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:STYTKYSYTGGCA---
--TTGCCATGGCAACC
 A T C G A C G T A G C T A C G T A C G T A G T C A T C G A G C T A C G T A C T G A T C G A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:10
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:STYTKYSYTGGCA---
--TTGCCATGGCAACN
 A T C G A C G T A G C T A C G T A C G T A G T C A T C G A G C T A C G T A C T G A T C G A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C