Information for 1-TRTTTRCHYW (Motif 2)

A C G T C T A G A C G T A C G T A C G T C T A G G T A C G C A T A G C T C G A T
Reverse Opposite:
G C T A T C G A C G T A C A T G A G T C C G T A G T C A C G T A A G T C C G T A
p-value:1e-81
log p-value:-1.885e+02
Information Content per bp:1.676
Number of Target Sequences with motif300.0
Percentage of Target Sequences with motif41.10%
Number of Background Sequences with motif5620.6
Percentage of Background Sequences with motif12.59%
Average Position of motif in Targets51.7 +/- 25.8bp
Average Position of motif in Background50.2 +/- 34.7bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer

Match Rank:1
Score:0.93
Offset:0
Orientation:forward strand
Alignment:TRTTTRCHYW
TRTTTACTTW
 A C G T C T A G A C G T A C G T A C G T C T A G G T A C G C A T A G C T C G A T
A C G T C T A G A G C T A C G T A C G T C T G A A G T C G A C T A G C T C G T A

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:2
Score:0.91
Offset:0
Orientation:reverse strand
Alignment:TRTTTRCHYW
TGTTTACTTT
 A C G T C T A G A C G T A C G T A C G T C T A G G T A C G C A T A G C T C G A T
A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G C T C G A T

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.91
Offset:0
Orientation:reverse strand
Alignment:TRTTTRCHYW
TGTTTACTTT
 A C G T C T A G A C G T A C G T A C G T C T A G G T A C G C A T A G C T C G A T
A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G C T C G A T

FOXA1/MA0148.3/Jaspar

Match Rank:4
Score:0.90
Offset:-4
Orientation:forward strand
Alignment:----TRTTTRCHYW-
TCCATGTTTACTTTG
 A C G T A C G T A C G T A C G T A C G T C T A G A C G T A C G T A C G T C T A G G T A C G C A T A G C T C G A T A C G T
G A C T A G T C A T G C G C T A C G A T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G C T C G A T C A T G

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:5
Score:0.90
Offset:-2
Orientation:reverse strand
Alignment:--TRTTTRCHYW-----
NSTGTTTRCWCAGBNNN
 A C G T A C G T A C G T C T A G A C G T A C G T A C G T C T A G G T A C G C A T A G C T C G A T A C G T A C G T A C G T A C G T A C G T
G A C T A T G C A C G T C T A G C G A T C A G T C A G T T C G A G A T C G C T A A G T C C G T A T C A G A T G C T A G C G A C T T A C G

MF0005.1_Forkhead_class/Jaspar

Match Rank:6
Score:0.89
Offset:0
Orientation:forward strand
Alignment:TRTTTRCHYW
TGTTTATTT-
 A C G T C T A G A C G T A C G T A C G T C T A G G T A C G C A T A G C T C G A T
G C A T C T A G A G C T G A C T C A G T C T G A A G C T C A G T A G C T A C G T

FOXD2/MA0847.1/Jaspar

Match Rank:7
Score:0.89
Offset:0
Orientation:reverse strand
Alignment:TRTTTRCHYW
TGTTTAC---
 A C G T C T A G A C G T A C G T A C G T C T A G G T A C G C A T A G C T C G A T
G A C T T C A G C G A T C A G T C A G T C T G A A G T C A C G T A C G T A C G T

FOXC2/MA0846.1/Jaspar

Match Rank:8
Score:0.88
Offset:-2
Orientation:reverse strand
Alignment:--TRTTTRCHYW
TTTGTTTACTTA
 A C G T A C G T A C G T C T A G A C G T A C G T A C G T C T A G G T A C G C A T A G C T C G A T
C G A T C G A T G A C T T C A G G A C T C A G T C A G T C T G A A G T C C G A T G A C T C G T A

Foxa2/MA0047.2/Jaspar

Match Rank:9
Score:0.88
Offset:0
Orientation:forward strand
Alignment:TRTTTRCHYW--
TGTTTACTTAGG
 A C G T C T A G A C G T A C G T A C G T C T A G G T A C G C A T A G C T C G A T A C G T A C G T
A C G T C T A G A C G T A C G T A C G T T C G A A G T C G C A T A G C T C G T A C A T G A T C G

Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer

Match Rank:10
Score:0.87
Offset:-3
Orientation:forward strand
Alignment:---TRTTTRCHYW--
BSNTGTTTACWYWGN
 A C G T A C G T A C G T A C G T C T A G A C G T A C G T A C G T C T A G G T A C G C A T A G C T C G A T A C G T A C G T
A G T C T A G C G A C T A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C T A G A C T C G T A C T A G A C T G