Information for 2-AGCCAATAAA (Motif 2)

C T G A T C A G A G T C G A T C G T C A C T G A G C A T C G T A C T G A C G T A
Reverse Opposite:
C G A T A G C T G C A T C G T A G A C T C A G T C T A G T C A G A G T C G A C T
p-value:1e-31
log p-value:-7.221e+01
Information Content per bp:1.636
Number of Target Sequences with motif111.0
Percentage of Target Sequences with motif14.09%
Number of Background Sequences with motif1779.6
Percentage of Background Sequences with motif3.78%
Average Position of motif in Targets50.9 +/- 25.6bp
Average Position of motif in Background50.6 +/- 30.7bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXB13/MA0901.1/Jaspar

Match Rank:1
Score:0.90
Offset:2
Orientation:forward strand
Alignment:AGCCAATAAA--
--CCAATAAAAC
 C T G A T C A G A G T C G A T C G T C A C T G A G C A T C G T A C T G A C G T A A C G T A C G T
A C G T A C G T T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C

HOXA13/MA0650.1/Jaspar

Match Rank:2
Score:0.89
Offset:2
Orientation:forward strand
Alignment:AGCCAATAAA--
--CCAATAAAAA
 C T G A T C A G A G T C G A T C G T C A C T G A G C A T C G T A C T G A C G T A A C G T A C G T
A C G T A C G T T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A

HOXD13/MA0909.1/Jaspar

Match Rank:3
Score:0.88
Offset:2
Orientation:forward strand
Alignment:AGCCAATAAA--
--CCAATAAAAA
 C T G A T C A G A G T C G A T C G T C A C T G A G C A T C G T A C T G A C G T A A C G T A C G T
A C G T A C G T A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:4
Score:0.87
Offset:1
Orientation:forward strand
Alignment:AGCCAATAAA-
-NCYAATAAAA
 C T G A T C A G A G T C G A T C G T C A C T G A G C A T C G T A C T G A C G T A A C G T
A C G T C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A

PH0057.1_Hoxb13/Jaspar

Match Rank:5
Score:0.87
Offset:-1
Orientation:forward strand
Alignment:-AGCCAATAAA-----
AACCCAATAAAATTCG
 A C G T C T G A T C A G A G T C G A T C G T C A C T G A G C A T C G T A C T G A C G T A A C G T A C G T A C G T A C G T A C G T
T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G

CDX1/MA0878.1/Jaspar

Match Rank:6
Score:0.86
Offset:2
Orientation:forward strand
Alignment:AGCCAATAAA-
--GCAATAAAA
 C T G A T C A G A G T C G A T C G T C A C T G A G C A T C G T A C T G A C G T A A C G T
A C G T A C G T T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:7
Score:0.86
Offset:1
Orientation:forward strand
Alignment:AGCCAATAAA-
-NGCAATTAAA
 C T G A T C A G A G T C G A T C G T C A C T G A G C A T C G T A C T G A C G T A A C G T
A C G T T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:8
Score:0.85
Offset:1
Orientation:reverse strand
Alignment:AGCCAATAAA-
-CCYMATAAAA
 C T G A T C A G A G T C G A T C G T C A C T G A G C A T C G T A C T G A C G T A A C G T
A C G T T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:9
Score:0.85
Offset:1
Orientation:forward strand
Alignment:AGCCAATAAA---
-NGYCATAAAWCH
 C T G A T C A G A G T C G A T C G T C A C T G A G C A T C G T A C T G A C G T A A C G T A C G T A C G T
A C G T T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

CDX2/MA0465.1/Jaspar

Match Rank:10
Score:0.85
Offset:0
Orientation:forward strand
Alignment:AGCCAATAAA-
AAGCCATAAAA
 C T G A T C A G A G T C G A T C G T C A C T G A G C A T C G T A C T G A C G T A A C G T
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A