Information for 3-ACACAGGTTCATG (Motif 6)

C G T A A T G C C G T A A G T C C G T A A C T G C A T G A C G T A C G T A T G C C G T A A C G T A T C G
Reverse Opposite:
A T G C C G T A A C G T A T C G G T C A G T C A G A T C G T A C C G A T A C T G C G A T A T C G A C G T
p-value:1e-11
log p-value:-2.705e+01
Information Content per bp:1.807
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.67%
Number of Background Sequences with motif53.4
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets46.9 +/- 24.3bp
Average Position of motif in Background55.1 +/- 25.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:1
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:ACACAGGTTCATG---
----TGATTTATGGCC
 C G T A A T G C C G T A A G T C C G T A A C T G C A T G A C G T A C G T A T G C C G T A A C G T A T C G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T C T A G G C T A C G A T C A G T A C G T G T C A A G C T C A T G T C A G A G T C A G T C

Hoxa9/MA0594.1/Jaspar

Match Rank:2
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:ACACAGGTTCATG--
----TGATTTATGGC
 C G T A A T G C C G T A A G T C C G T A A C T G C A T G A C G T A C G T A T G C C G T A A C G T A T C G A C G T A C G T
A C G T A C G T A C G T A C G T C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:3
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:ACACAGGTTCATG-
----TGATTGATGA
 C G T A A T G C C G T A A G T C C G T A A C T G C A T G A C G T A C G T A T G C C G T A A C G T A T C G A C G T
A C G T A C G T A C G T A C G T C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A

PH0073.1_Hoxc9/Jaspar

Match Rank:4
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:ACACAGGTTCATG------
---NNAATTAATGACCNNN
 C G T A A T G C C G T A A G T C C G T A A C T G C A T G A C G T A C G T A T G C C G T A A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T G C A G C A T C T G A C T G A C G A T A C G T C G T A C G T A A G C T A C T G C T G A A G T C G A T C A G C T G T A C A G T C

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:5
Score:0.55
Offset:6
Orientation:forward strand
Alignment:ACACAGGTTCATG-
------GKTAATGR
 C G T A A T G C C G T A A G T C C G T A A C T G C A T G A C G T A C G T A T G C C G T A A C G T A T C G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C T G C A G T A C G T C G T A C G T A A C G T A C T G C T G A

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.55
Offset:6
Orientation:reverse strand
Alignment:ACACAGGTTCATG---
------GTTAATGGCC
 C G T A A T G C C G T A A G T C C G T A A C T G C A T G A C G T A C G T A T G C C G T A A C G T A T C G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:7
Score:0.55
Offset:4
Orientation:forward strand
Alignment:ACACAGGTTCATG---
----TGATTRATGGCY
 C G T A A T G C C G T A A G T C C G T A A C T G C A T G A C G T A C G T A T G C C G T A A C G T A T C G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C

PB0178.1_Sox8_2/Jaspar

Match Rank:8
Score:0.55
Offset:4
Orientation:forward strand
Alignment:ACACAGGTTCATG-----
----ACATTCATGACACG
 C G T A A T G C C G T A A G T C C G T A A C T G C A T G A C G T A C G T A T G C C G T A A C G T A T C G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A G A T C G C T A A C G T C G A T G A T C T C G A A C G T C T A G G C T A G T A C G T C A A T G C T A C G

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:9
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:ACACAGGTTCATG---
----DGWTTTATGRCN
 C G T A A T G C C G T A A G T C C G T A A C T G C A T G A C G T A C G T A T G C C G T A A C G T A T C G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

POL009.1_DCE_S_II/Jaspar

Match Rank:10
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:ACACAGGTTCATG
-CACAGN------
 C G T A A T G C C G T A A G T C C G T A A C T G C A T G A C G T A C G T A T G C C G T A A C G T A T C G
A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T