Information for 6-GTTTATTGGC (Motif 3)

T A C G A C G T C A G T C A G T G C T A A C G T A C G T C A T G C A T G T A G C
Reverse Opposite:
A T C G G T A C G T A C T G C A T G C A C G A T G T C A G C T A T G C A A T G C
p-value:1e-15
log p-value:-3.463e+01
Information Content per bp:1.667
Number of Target Sequences with motif58.0
Percentage of Target Sequences with motif6.94%
Number of Background Sequences with motif942.6
Percentage of Background Sequences with motif2.00%
Average Position of motif in Targets43.4 +/- 27.7bp
Average Position of motif in Background51.6 +/- 29.1bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA13/MA0650.1/Jaspar

Match Rank:1
Score:0.84
Offset:-1
Orientation:reverse strand
Alignment:-GTTTATTGGC
TTTTTATTGG-
 A C G T T A C G A C G T C A G T C A G T G C T A A C G T A C G T C A T G C A T G T A G C
C A G T A C G T A C G T C G A T C G A T C G T A C G A T C A G T T C A G A T C G A C G T

HOXB13/MA0901.1/Jaspar

Match Rank:2
Score:0.84
Offset:-1
Orientation:reverse strand
Alignment:-GTTTATTGGC
NTTTTATTGG-
 A C G T T A C G A C G T C A G T C A G T G C T A A C G T A C G T C A T G C A T G T A G C
C A T G C A G T C A G T C G A T G C A T C T G A G C A T C A G T C T A G A T C G A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:3
Score:0.79
Offset:-1
Orientation:reverse strand
Alignment:-GTTTATTGGC
NTTTTATTGG-
 A C G T T A C G A C G T C A G T C A G T G C T A A C G T A C G T C A T G C A T G T A G C
C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G A C G T

CDX1/MA0878.1/Jaspar

Match Rank:4
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:GTTTATTGGC
TTTTATTGC-
 T A C G A C G T C A G T C A G T G C T A A C G T A C G T C A T G C A T G T A G C
C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C A C G T

PH0057.1_Hoxb13/Jaspar

Match Rank:5
Score:0.77
Offset:-4
Orientation:reverse strand
Alignment:----GTTTATTGGC--
NNAATTTTATTGGNTN
 A C G T A C G T A C G T A C G T T A C G A C G T C A G T C A G T G C T A A C G T A C G T C A T G C A T G T A G C A C G T A C G T
A T G C C T A G C G T A C G T A A C G T C G A T C G A T G C A T C T G A G A C T C A G T C T A G T A C G C A T G G A C T A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:6
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:GTTTATTGGC
TTTTATTRGN
 T A C G A C G T C A G T C A G T G C T A A C G T A C G T C A T G C A T G T A G C
C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:7
Score:0.77
Offset:0
Orientation:forward strand
Alignment:GTTTATTGGC
TTTTATKRGG
 T A C G A C G T C A G T C A G T G C T A A C G T A C G T C A T G C A T G T A G C
C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G

PH0078.1_Hoxd13/Jaspar

Match Rank:8
Score:0.76
Offset:-4
Orientation:reverse strand
Alignment:----GTTTATTGGC--
NNANTTTTATTGGNNN
 A C G T A C G T A C G T A C G T T A C G A C G T C A G T C A G T G C T A A C G T A C G T C A T G C A T G T A G C A C G T A C G T
C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G

Foxq1/MA0040.1/Jaspar

Match Rank:9
Score:0.75
Offset:-4
Orientation:forward strand
Alignment:----GTTTATTGGC
TATTGTTTATT---
 A C G T A C G T A C G T A C G T T A C G A C G T C A G T C A G T G C T A A C G T A C G T C A T G C A T G T A G C
G A C T C T G A G C A T C G A T A C T G A C G T A C G T A C G T C T G A A C G T C G A T A C G T A C G T A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:10
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--GTTTATTGGC
DGWTTTATGRCN
 A C G T A C G T T A C G A C G T C A G T C A G T G C T A A C G T A C G T C A T G C A T G T A G C
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C