Information for 5-AATAAATATGCADTTG (Motif 5)

C G T A C G T A C G A T C T G A C G T A C G T A A C G T C G T A G C A T C T A G A G T C C G T A C G A T A C G T C A G T A C T G
Reverse Opposite:
G T A C G T C A T G C A G C T A C G A T C T A G A G T C C G T A C G A T G T C A C G A T C G A T G A C T C G T A G A C T G C A T
p-value:1e-13
log p-value:-3.185e+01
Information Content per bp:1.713
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.21%
Number of Background Sequences with motif11.8
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets56.0 +/- 29.5bp
Average Position of motif in Background51.0 +/- 20.9bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.71
Offset:1
Orientation:forward strand
Alignment:AATAAATATGCADTTG
-ATGAATATTCATGAG
 C G T A C G T A C G A T C T G A C G T A C G T A A C G T C G T A G C A T C T A G A G T C C G T A C G A T A C G T C A G T A C T G
A C G T G C T A A C G T C T A G G T C A C G T A A C G T C G T A C G A T C A G T A G T C C G T A A C G T C T A G C T G A A T C G

POU4F2/MA0683.1/Jaspar

Match Rank:2
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---AATAAATATGCADTTG
CTCATTAATTATGCAT---
 A C G T A C G T A C G T C G T A C G T A C G A T C T G A C G T A C G T A A C G T C G T A G C A T C T A G A G T C C G T A C G A T A C G T C A G T A C T G
A G T C G A C T T G A C T G C A A G C T G A C T C G T A C G T A C G A T G C A T C G T A C G A T C A T G G A T C C T G A G A C T A C G T A C G T A C G T

FOXC1/MA0032.2/Jaspar

Match Rank:3
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--AATAAATATGCADTTG
TATGTAAATAT-------
 A C G T A C G T C G T A C G T A C G A T C T G A C G T A C G T A A C G T C G T A G C A T C T A G A G T C C G T A C G A T A C G T C A G T A C T G
G C A T C T G A C G A T T C A G G C A T G T C A G T C A C T G A A G C T C T G A G C A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:4
Score:0.64
Offset:1
Orientation:forward strand
Alignment:AATAAATATGCADTTG
-ATGMATATDC-----
 C G T A C G T A C G A T C T G A C G T A C G T A A C G T C G T A G C A T C T A G A G T C C G T A C G A T A C G T C A G T A C T G
A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C A C G T A C G T A C G T A C G T A C G T

POU4F1/MA0790.1/Jaspar

Match Rank:5
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-AATAAATATGCADTTG
CATTAATTATTCAT---
 A C G T C G T A C G T A C G A T C T G A C G T A C G T A A C G T C G T A G C A T C T A G A G T C C G T A C G A T A C G T C A G T A C T G
G T A C C T G A A G C T G C A T G C T A G C T A G C A T G C A T C G T A C G A T C A G T G A T C C T G A A G C T A C G T A C G T A C G T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:6
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:AATAAATATGCADTTG
---GAATATTCAT---
 C G T A C G T A C G A T C T G A C G T A C G T A A C G T C G T A G C A T C T A G A G T C C G T A C G A T A C G T C A G T A C T G
A C G T A C G T A C G T T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T A C G T A C G T A C G T

FOXB1/MA0845.1/Jaspar

Match Rank:7
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--AATAAATATGCADTTG
TATGTAAATAT-------
 A C G T A C G T C G T A C G T A C G A T C T G A C G T A C G T A A C G T C G T A G C A T C T A G A G T C C G T A C G A T A C G T C A G T A C T G
G C A T C T G A C G A T C T A G G A C T T G C A G C T A C G T A A G C T C T G A G C A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

POU4F3/MA0791.1/Jaspar

Match Rank:8
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---AATAAATATGCADTTG
CTCATTAATTATGCAT---
 A C G T A C G T A C G T C G T A C G T A C G A T C T G A C G T A C G T A A C G T C G T A G C A T C T A G A G T C C G T A C G A T A C G T C A G T A C T G
A G T C C A G T G T A C C T G A G A C T G C A T G C T A G C T A G C A T G C A T G C T A C G A T C A T G G A T C T C G A G A C T A C G T A C G T A C G T

MF0005.1_Forkhead_class/Jaspar

Match Rank:9
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-AATAAATATGCADTTG
AAATAAACA--------
 A C G T C G T A C G T A C G A T C T G A C G T A C G T A A C G T C G T A G C A T C T A G A G T C C G T A C G A T A C G T C A G T A C T G
T C G A G T C A T C G A G A C T G T C A C T G A T C G A G A T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

FOXL1/MA0033.2/Jaspar

Match Rank:10
Score:0.63
Offset:1
Orientation:forward strand
Alignment:AATAAATATGCADTTG
-GTAAACA--------
 C G T A C G T A C G A T C T G A C G T A C G T A A C G T C G T A G C A T C T A G A G T C C G T A C G A T A C G T C A G T A C T G
A C G T C T A G G A C T T G C A G T C A T G C A A G T C G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T