Information for 9-TGTAGCTCAC (Motif 26)

A C G T A C T G A C G T G T C A A C T G A G T C C G A T A G T C G T C A G T A C
Reverse Opposite:
A C T G C A G T A C T G C G T A A C T G T G A C A C G T T G C A A G T C C G T A
p-value:1e-9
log p-value:-2.264e+01
Information Content per bp:1.844
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.79%
Number of Background Sequences with motif71.5
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets54.9 +/- 20.3bp
Average Position of motif in Background44.1 +/- 30.4bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TGTAGCTCAC
NCTGTCAATCAN
 A C G T A C G T A C G T A C T G A C G T G T C A A C T G A G T C C G A T A G T C G T C A G T A C
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:2
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--TGTAGCTCAC
SCTGTCAVTCAV
 A C G T A C G T A C G T A C T G A C G T G T C A A C T G A G T C C G A T A G T C G T C A G T A C
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:3
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---TGTAGCTCAC
GSCTGTCACTCA-
 A C G T A C G T A C G T A C G T A C T G A C G T G T C A A C T G A G T C C G A T A G T C G T C A G T A C
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T

DMRT3/MA0610.1/Jaspar

Match Rank:4
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--TGTAGCTCAC
AATGTATCAAT-
 A C G T A C G T A C G T A C T G A C G T G T C A A C T G A G T C C G A T A G T C G T C A G T A C
G T C A C G T A C G A T A C T G A C G T C G T A C G A T A G T C G T C A C G T A A C G T A C G T

ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TGTAGCTCAC
TGGGGCCCAC
 A C G T A C T G A C G T G T C A A C T G A G T C C G A T A G T C G T C A G T A C
G A C T C T A G A C T G A C T G T A C G A G T C A G T C A G T C C T G A A T G C

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:6
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TGTAGCTCAC--
CTGTCTGTCACCT
 A C G T A C G T A C T G A C G T G T C A A C T G A G T C C G A T A G T C G T C A G T A C A C G T A C G T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:7
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----TGTAGCTCAC
TATAAGTAGGTCAA
 A C G T A C G T A C G T A C G T A C G T A C T G A C G T G T C A A C T G A G T C C G A T A G T C G T C A G T A C
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A

RORA/MA0071.1/Jaspar

Match Rank:8
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-TGTAGCTCAC
ATCAAGGTCA-
 A C G T A C G T A C T G A C G T G T C A A C T G A G T C C G A T A G T C G T C A G T A C
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:TGTAGCTCAC--
TGTCTGDCACCT
 A C G T A C T G A C G T G T C A A C T G A G T C C G A T A G T C G T C A G T A C A C G T A C G T
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

NR4A2/MA0160.1/Jaspar

Match Rank:10
Score:0.55
Offset:2
Orientation:forward strand
Alignment:TGTAGCTCAC
--AAGGTCAC
 A C G T A C T G A C G T G T C A A C T G A G T C C G A T A G T C G T C A G T A C
A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C