Information for 4-GGACAGAGGCCAA (Motif 3)

A C T G A C T G G T C A T G A C C G T A A T C G C G T A C A T G A C T G G T A C A G T C C G T A C T G A
Reverse Opposite:
A G C T A C G T A C T G A C T G A G T C G T A C A C G T A T G C A C G T A C T G A C G T A G T C A G T C
p-value:1e-13
log p-value:-3.129e+01
Information Content per bp:1.842
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.80%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets50.3 +/- 23.9bp
Average Position of motif in Background58.2 +/- 24.1bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:1
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--GGACAGAGGCCAA
TAGGGCAAAGGTCA-
 A C G T A C G T A C T G A C T G G T C A T G A C C G T A A T C G C G T A C A T G A C T G G T A C A G T C C G T A C T G A
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A A C G T

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:2
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---GGACAGAGGCCAA
GTAGGGCAAAGGTCA-
 A C G T A C G T A C G T A C T G A C T G G T C A T G A C C G T A A T C G C G T A C A T G A C T G G T A C A G T C C G T A C T G A
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:3
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--GGACAGAGGCCAA
TGGGGCAAAGGTCA-
 A C G T A C G T A C T G A C T G G T C A T G A C C G T A A T C G C G T A C A T G A C T G G T A C A G T C C G T A C T G A
C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:4
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-GGACAGAGGCCAA
TGGCACCATGCCAA
 A C G T A C T G A C T G G T C A T G A C C G T A A T C G C G T A C A T G A C T G G T A C A G T C C G T A C T G A
A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:5
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--GGACAGAGGCCAA
GAGGTCAAAGGTCA-
 A C G T A C G T A C T G A C T G G T C A T G A C C G T A A T C G C G T A C A T G A C T G G T A C A G T C C G T A C T G A
T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A A C G T

NR2C2/MA0504.1/Jaspar

Match Rank:6
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---GGACAGAGGCCAA
AGGGGTCAGAGGTCA-
 A C G T A C G T A C G T A C T G A C T G G T C A T G A C C G T A A T C G C G T A C A T G A C T G G T A C A G T C C G T A C T G A
T G C A T C A G T C A G A C T G C A T G C A G T A T G C C T G A C T A G C T G A C T A G C A T G A C G T A G T C C T G A A C G T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--GGACAGAGGCCAA-
TTGGCANNNTGCCAAG
 A C G T A C G T A C T G A C T G G T C A T G A C C G T A A T C G C G T A C A T G A C T G G T A C A G T C C G T A C T G A A C G T
G A C T C A G T A C T G C T A G T G A C G C T A T A G C C G T A T A C G C G A T A C T G G A T C G T A C G T C A C T G A T C A G

NFIX/MA0671.1/Jaspar

Match Rank:8
Score:0.64
Offset:5
Orientation:forward strand
Alignment:GGACAGAGGCCAA-
-----CGTGCCAAG
 A C T G A C T G G T C A T G A C C G T A A T C G C G T A C A T G A C T G G T A C A G T C C G T A C T G A A C G T
A C G T A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

HNF4G/MA0484.1/Jaspar

Match Rank:9
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---GGACAGAGGCCAA
AGAGTCCAAAGTCCA-
 A C G T A C G T A C G T A C T G A C T G G T C A T G A C C G T A A T C G C G T A C A T G A C T G G T A C A G T C C G T A C T G A
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A A C G T

NFIC/MA0161.1/Jaspar

Match Rank:10
Score:0.64
Offset:7
Orientation:reverse strand
Alignment:GGACAGAGGCCAA
-------TGCCAA
 A C T G A C T G G T C A T G A C C G T A A T C G C G T A C A T G A C T G G T A C A G T C C G T A C T G A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A