Information for 12-GCWGGTWTTWATW (Motif 11)

A C T G A G T C C G T A A T C G A T C G A C G T C G T A A C G T A C G T C G T A C G T A A C G T C G T A
Reverse Opposite:
C G A T C G T A A C G T C G A T C G T A C G T A C G A T C G T A A T G C A T G C C G A T A C T G G T A C
p-value:1e-9
log p-value:-2.286e+01
Information Content per bp:1.871
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.78%
Number of Background Sequences with motif4.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets31.5 +/- 10.4bp
Average Position of motif in Background60.0 +/- 3.8bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid3b/MA0601.1/Jaspar

Match Rank:1
Score:0.66
Offset:4
Orientation:forward strand
Alignment:GCWGGTWTTWATW--
----ATATTAATTAA
 A C T G A G T C C G T A A T C G A T C G A C G T C G T A A C G T A C G T C G T A C G T A A C G T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T C G T A C G A T G C T A C G A T A C G T C G T A C G T A C G A T G C A T C G T A C G T A

POL012.1_TATA-Box/Jaspar

Match Rank:2
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GCWGGTWTTWATW-
NNNNNNCTTTTATAN
 A C G T A C T G A G T C C G T A A T C G A T C G A C G T C G T A A C G T A C G T C G T A C G T A A C G T C G T A A C G T
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C

TBP/MA0108.2/Jaspar

Match Rank:3
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GCWGGTWTTWATW-
NNNNNNCTTTTATAN
 A C G T A C T G A G T C C G T A A T C G A T C G A C G T C G T A A C G T A C G T C G T A C G T A A C G T C G T A A C G T
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C

Arid3a/MA0151.1/Jaspar

Match Rank:4
Score:0.63
Offset:6
Orientation:reverse strand
Alignment:GCWGGTWTTWATW
------TTTAAT-
 A C T G A G T C C G T A A T C G A T C G A C G T C G T A A C G T A C G T C G T A C G T A A C G T C G T A
A C G T A C G T A C G T A C G T A C G T A C G T G C A T A C G T A C G T C T G A C G T A A C G T A C G T

Hoxd9/MA0913.1/Jaspar

Match Rank:5
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:GCWGGTWTTWATW--
-----TTTTTATTGC
 A C T G A G T C C G T A A T C G A T C G A C G T C G T A A C G T A C G T C G T A C G T A A C G T C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T G C A T C A G T C G A T C G A T C G T A G A C T A C G T C T A G A G T C

PH0129.1_Otx1/Jaspar

Match Rank:6
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GCWGGTWTTWATW---
AGAGGGGATTAATTTAT
 A C G T A C T G A G T C C G T A A T C G A T C G A C G T C G T A A C G T A C G T C G T A C G T A A C G T C G T A A C G T A C G T A C G T
C T A G C A T G C G T A C T A G T A C G C T A G C A T G G T C A A C G T C G A T C G T A C G T A G A C T G C A T G A C T G C T A A G C T

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:7
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:GCWGGTWTTWATW
--AGGTGTTAAT-
 A C T G A G T C C G T A A T C G A T C G A C G T C G T A A C G T A C G T C G T A C G T A A C G T C G T A
A C G T A C G T C T G A C T A G A T C G C G A T C T A G G C A T A C G T C T G A C T G A C G A T A C G T

PH0130.1_Otx2/Jaspar

Match Rank:8
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GCWGGTWTTWATW---
TGTAGGGATTAATTGTC
 A C G T A C T G A G T C C G T A A T C G A T C G A C G T C G T A A C G T A C G T C G T A C G T A A C G T C G T A A C G T A C G T A C G T
C A G T C T A G C G A T T C G A T C A G T C A G C A T G G T C A C G A T C G A T C G T A C T G A A G C T G A C T C T A G C A G T G A T C

HOXA10/MA0899.1/Jaspar

Match Rank:9
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:GCWGGTWTTWATW---
-----NTTTTATTACN
 A C T G A G T C C G T A A T C G A T C G A C G T C G T A A C G T A C G T C G T A C G T A A C G T C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C

PH0138.1_Pitx2/Jaspar

Match Rank:10
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GCWGGTWTTWATW---
TGAAGGGATTAATCATC
 A C G T A C T G A G T C C G T A A T C G A T C G A C G T C G T A A C G T A C G T C G T A C G T A A C G T C G T A A C G T A C G T A C G T
C A G T C A T G C G T A T C G A T C A G C T A G C A T G G T C A A G C T G A C T C G T A C T G A A G C T G A T C C T G A C G A T G A T C