Information for 4-AGTTTACTGGCTW (Motif 6)

C G T A A T C G A C G T A C G T A G C T C G T A T G A C A C G T A C T G C T A G A T G C A C G T C G A T
Reverse Opposite:
C G T A C G T A A T C G A G T C A G T C C G T A A C T G A C G T C T G A C G T A C G T A A T G C A C G T
p-value:1e-13
log p-value:-3.062e+01
Information Content per bp:1.839
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.03%
Number of Background Sequences with motif5.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets41.7 +/- 21.4bp
Average Position of motif in Background35.1 +/- 24.8bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0064.1_Hoxb9/Jaspar

Match Rank:1
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--AGTTTACTGGCTW-
NGANTTTTATGGCTCN
 A C G T A C G T C G T A A T C G A C G T A C G T A G C T C G T A T G A C A C G T A C T G C T A G A T G C A C G T C G A T A C G T
G A T C C A T G C T G A C G T A G C A T C G A T C G A T C G A T C G T A A G C T C A T G C T A G T A G C A G C T A G T C A G C T

PH0057.1_Hoxb13/Jaspar

Match Rank:2
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---AGTTTACTGGCTW
NNAATTTTATTGGNTN
 A C G T A C G T A C G T C G T A A T C G A C G T A C G T A G C T C G T A T G A C A C G T A C T G C T A G A T G C A C G T C G A T
A T G C C T A G C G T A C G T A A C G T C G A T C G A T G C A T C T G A G A C T C A G T C T A G T A C G C A T G G A C T A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:3
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:AGTTTACTGGCTW--
---TGATTGGCTANN
 C G T A A T C G A C G T A C G T A G C T C G T A T G A C A C G T A C T G C T A G A T G C A C G T C G A T A C G T A C G T
A C G T A C G T A C G T A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:4
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--AGTTTACTGGCTW--
NTNNTTAAGTGGNTNAN
 A C G T A C G T C G T A A T C G A C G T A C G T A G C T C G T A T G A C A C G T A C T G C T A G A T G C A C G T C G A T A C G T A C G T
T C G A A G C T A G T C A T G C G C A T C G A T C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G T A C A T G

PH0115.1_Nkx2-6/Jaspar

Match Rank:5
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--AGTTTACTGGCTW-
AATNTTAAGTGGNTNN
 A C G T A C G T C G T A A T C G A C G T A C G T A G C T C G T A T G A C A C G T A C T G C T A G A T G C A C G T C G A T A C G T
C T G A C T G A C G A T A C T G G C A T A G C T C T G A C G T A A C T G C G A T C T A G A T C G G T A C G A C T G A C T G C T A

HOXB13/MA0901.1/Jaspar

Match Rank:6
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:AGTTTACTGGCTW
NTTTTATTGG---
 C G T A A T C G A C G T A C G T A G C T C G T A T G A C A C G T A C T G C T A G A T G C A C G T C G A T
C A T G C A G T C A G T C G A T G C A T C T G A G C A T C A G T C T A G A T C G A C G T A C G T A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:7
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:AGTTTACTGGCTW
TTTTTATTGG---
 C G T A A T C G A C G T A C G T A G C T C G T A T G A C A C G T A C T G C T A G A T G C A C G T C G A T
C A G T A C G T A C G T C G A T C G A T C G T A C G A T C A G T T C A G A T C G A C G T A C G T A C G T

Vdr/MA0693.1/Jaspar

Match Rank:8
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AGTTTACTGGCTW--
GAGTTCATTGAGTTCA
 A C G T C G T A A T C G A C G T A C G T A G C T C G T A T G A C A C G T A C T G C T A G A T G C A C G T C G A T A C G T A C G T
T C A G T C G A C A T G A C G T A C G T A G T C C T G A G A C T G A C T T C A G T C G A C T A G A C G T A C G T A G T C C T G A

PH0056.1_Hoxa9/Jaspar

Match Rank:9
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---AGTTTACTGGCTW-
ANTAATTTTATGGCCGN
 A C G T A C G T A C G T C G T A A T C G A C G T A C G T A G C T C G T A T G A C A C G T A C T G C T A G A T G C A C G T C G A T A C G T
G C T A G A C T G C A T G C T A C G T A G C A T C G A T C G A T C G A T C G T A G A C T C A T G C T A G T A G C G A T C A C T G G A C T

PB0005.1_Bbx_1/Jaspar

Match Rank:10
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-AGTTTACTGGCTW-
NANTTCATTGAATTA
 A C G T C G T A A T C G A C G T A C G T A G C T C G T A T G A C A C G T A C T G C T A G A T G C A C G T C G A T A C G T
G A T C C G T A T A G C C G A T C G A T T G A C G C T A G C A T C G A T A C T G C G T A G C T A G A C T C G A T C G T A