Information for 6-GGAGTTGGCA (Motif 5)

C A T G C T A G C G T A C A T G A C G T C A G T C A T G C T A G G T A C C T G A
Reverse Opposite:
G A C T C A T G G A T C G T A C G T C A T G C A G T A C G C A T G A T C G T A C
p-value:1e-13
log p-value:-3.082e+01
Information Content per bp:1.667
Number of Target Sequences with motif47.0
Percentage of Target Sequences with motif6.06%
Number of Background Sequences with motif758.9
Percentage of Background Sequences with motif1.63%
Average Position of motif in Targets60.3 +/- 25.7bp
Average Position of motif in Background48.5 +/- 30.1bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.82
Offset:2
Orientation:reverse strand
Alignment:GGAGTTGGCA--
--NNTTGGCANN
 C A T G C T A G C G T A C A T G A C G T C A G T C A T G C T A G G T A C C T G A A C G T A C G T
A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

Hic1/MA0739.1/Jaspar

Match Rank:2
Score:0.81
Offset:2
Orientation:reverse strand
Alignment:GGAGTTGGCA-
--GGTTGGCAT
 C A T G C T A G C G T A C A T G A C G T C A G T C A T G C T A G G T A C C T G A A C G T
A C G T A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.78
Offset:3
Orientation:reverse strand
Alignment:GGAGTTGGCA--
---NTTGGCANN
 C A T G C T A G C G T A C A T G A C G T C A G T C A T G C T A G G T A C C T G A A C G T A C G T
A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.77
Offset:3
Orientation:reverse strand
Alignment:GGAGTTGGCA-
---CTTGGCAA
 C A T G C T A G C G T A C A T G A C G T C A G T C A T G C T A G G T A C C T G A A C G T
A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.76
Offset:4
Orientation:forward strand
Alignment:GGAGTTGGCA
----TTGGCA
 C A T G C T A G C G T A C A T G A C G T C A G T C A T G C T A G G T A C C T G A
A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:6
Score:0.74
Offset:2
Orientation:reverse strand
Alignment:GGAGTTGGCA
--ARNTGACA
 C A T G C T A G C G T A C A T G A C G T C A G T C A T G C T A G G T A C C T G A
A C G T A C G T T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A

PB0029.1_Hic1_1/Jaspar

Match Rank:7
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--GGAGTTGGCA----
NGTAGGTTGGCATNNN
 A C G T A C G T C A T G C T A G C G T A C A T G A C G T C A G T C A T G C T A G G T A C C T G A A C G T A C G T A C G T A C G T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

HIC2/MA0738.1/Jaspar

Match Rank:8
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:GGAGTTGGCA-
--NGTGGGCAT
 C A T G C T A G C G T A C A T G A C G T C A G T C A T G C T A G G T A C C T G A A C G T
A C G T A C G T T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:9
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GGAGTTGGCA--
GGTGYTGACAGS
 C A T G C T A G C G T A C A T G A C G T C A G T C A T G C T A G G T A C C T G A A C G T A C G T
T C A G A T C G G A C T A C T G G A C T C A G T C T A G C G T A G T A C C G T A C T A G A T C G

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:10
Score:0.65
Offset:4
Orientation:forward strand
Alignment:GGAGTTGGCA--
----YTGWCADY
 C A T G C T A G C G T A C A T G A C G T C A G T C A T G C T A G G T A C C T G A A C G T A C G T
A C G T A C G T A C G T A C G T G A C T G C A T C T A G C G A T G A T C T C G A C A T G G A T C