Information for 3-ATGTTTGACTTGGCAT (Motif 4)

G T C A C G A T C T A G A G C T C A G T C G A T C T A G G T C A A T G C G C A T C G A T A C T G A C T G T G A C T C G A A C G T
Reverse Opposite:
T C G A A G C T A C T G G T A C G T A C C G T A C G T A T A C G C A G T A G T C C G T A G C T A C T G A G A T C C G T A A C G T
p-value:1e-14
log p-value:-3.303e+01
Information Content per bp:1.667
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.55%
Number of Background Sequences with motif21.8
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets60.7 +/- 29.9bp
Average Position of motif in Background50.7 +/- 30.1bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.80
Offset:-1
Orientation:forward strand
Alignment:-ATGTTTGACTTGGCAT
NNTGTTTATTTTGGCA-
 A C G T G T C A C G A T C T A G A G C T C A G T C G A T C T A G G T C A A T G C G C A T C G A T A C T G A C T G T G A C T C G A A C G T
C G A T G A C T C G A T T C A G G A C T A C G T C A G T C T G A G A C T G A C T A G C T C G A T A C T G A T C G G T A C G C T A A C G T

NFIA/MA0670.1/Jaspar

Match Rank:2
Score:0.61
Offset:7
Orientation:reverse strand
Alignment:ATGTTTGACTTGGCAT-
-------NNTTGGCANN
 G T C A C G A T C T A G A G C T C A G T C G A T C T A G G T C A A T G C G C A T C G A T A C T G A C T G T G A C T C G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

Nr2e1/MA0676.1/Jaspar

Match Rank:3
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:ATGTTTGACTTGGCAT
----TTGACTTTT---
 G T C A C G A T C T A G A G C T C A G T C G A T C T A G G T C A A T G C G C A T C G A T A C T G A C T G T G A C T C G A A C G T
A C G T A C G T A C G T A C G T C G A T A C G T T C A G C T G A G A T C G A C T G A C T G A C T C G A T A C G T A C G T A C G T

CREB3L1/MA0839.1/Jaspar

Match Rank:4
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:ATGTTTGACTTGGCAT
--TGATGACGTGGCAN
 G T C A C G A T C T A G A G C T C A G T C G A T C T A G G T C A A T G C G C A T C G A T A C T G A C T G T G A C T C G A A C G T
A C G T A C G T G A C T C T A G T C G A G A C T A C T G G C T A A G T C A T C G A G C T C T A G C A T G G A T C C T G A A G C T

CREB3/MA0638.1/Jaspar

Match Rank:5
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:ATGTTTGACTTGGCAT
--NGATGACGTGGCAN
 G T C A C G A T C T A G A G C T C A G T C G A T C T A G G T C A A T G C G C A T C G A T A C T G A C T G T G A C T C G A A C G T
A C G T A C G T A G C T C A T G T C G A G A C T A C T G C G T A G A T C A C T G C G A T A T C G C A T G G T A C T C G A A G T C

NFIX/MA0671.1/Jaspar

Match Rank:6
Score:0.56
Offset:8
Orientation:reverse strand
Alignment:ATGTTTGACTTGGCAT-
--------NTTGGCANN
 G T C A C G A T C T A G A G C T C A G T C G A T C T A G G T C A A T G C G C A T C G A T A C T G A C T G T G A C T C G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.56
Offset:8
Orientation:reverse strand
Alignment:ATGTTTGACTTGGCAT
--------CTTGGCAA
 G T C A C G A T C T A G A G C T C A G T C G A T C T A G G T C A A T G C G C A T C G A T A C T G A C T G T G A C T C G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

NFIC/MA0161.1/Jaspar

Match Rank:8
Score:0.56
Offset:9
Orientation:forward strand
Alignment:ATGTTTGACTTGGCAT
---------TTGGCA-
 G T C A C G A T C T A G A G C T C A G T C G A T C T A G G T C A A T G C G C A T C G A T A C T G A C T G T G A C T C G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T

Hic1/MA0739.1/Jaspar

Match Rank:9
Score:0.55
Offset:7
Orientation:reverse strand
Alignment:ATGTTTGACTTGGCAT
-------GGTTGGCAT
 G T C A C G A T C T A G A G C T C A G T C G A T C T A G G T C A A T G C G C A T C G A T A C T G A C T G T G A C T C G A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T

FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer

Match Rank:10
Score:0.55
Offset:1
Orientation:forward strand
Alignment:ATGTTTGACTTGGCAT
-TRTTTACTTW-----
 G T C A C G A T C T A G A G C T C A G T C G A T C T A G G T C A A T G C G C A T C G A T A C T G A C T G T G A C T C G A A C G T
A C G T A C G T C T A G A G C T A C G T A C G T C T G A A G T C G A C T A G C T C G T A A C G T A C G T A C G T A C G T A C G T