Information for 3-GCCHATAAAA (Motif 2)

C T A G T A G C G A T C G C A T C T G A A C G T C G T A G T C A G C T A C T G A
Reverse Opposite:
A G C T C G A T A C G T C G A T G T C A G A C T C G T A C T A G A T C G G A T C
p-value:1e-22
log p-value:-5.281e+01
Information Content per bp:1.669
Number of Target Sequences with motif119.0
Percentage of Target Sequences with motif15.35%
Number of Background Sequences with motif2565.1
Percentage of Background Sequences with motif5.50%
Average Position of motif in Targets53.6 +/- 25.8bp
Average Position of motif in Background50.2 +/- 31.2bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:1
Score:0.94
Offset:0
Orientation:forward strand
Alignment:GCCHATAAAA
NGCAATTAAA
 C T A G T A G C G A T C G C A T C T G A A C G T C G T A G T C A G C T A C T G A
T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:2
Score:0.93
Offset:0
Orientation:forward strand
Alignment:GCCHATAAAA
NCYAATAAAA
 C T A G T A G C G A T C G C A T C T G A A C G T C G T A G T C A G C T A C T G A
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A

HOXD13/MA0909.1/Jaspar

Match Rank:3
Score:0.92
Offset:1
Orientation:forward strand
Alignment:GCCHATAAAA-
-CCAATAAAAA
 C T A G T A G C G A T C G C A T C T G A A C G T C G T A G T C A G C T A C T G A A C G T
A C G T A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A

HOXB13/MA0901.1/Jaspar

Match Rank:4
Score:0.91
Offset:1
Orientation:forward strand
Alignment:GCCHATAAAA-
-CCAATAAAAC
 C T A G T A G C G A T C G C A T C T G A A C G T C G T A G T C A G C T A C T G A A C G T
A C G T T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C

HOXA13/MA0650.1/Jaspar

Match Rank:5
Score:0.90
Offset:1
Orientation:forward strand
Alignment:GCCHATAAAA-
-CCAATAAAAA
 C T A G T A G C G A T C G C A T C T G A A C G T C G T A G T C A G C T A C T G A A C G T
A C G T T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A

HOXA10/MA0899.1/Jaspar

Match Rank:6
Score:0.88
Offset:0
Orientation:forward strand
Alignment:GCCHATAAAA-
GGTAATAAAAA
 C T A G T A G C G A T C G C A T C T G A A C G T C G T A G T C A G C T A C T G A A C G T
C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A

PH0078.1_Hoxd13/Jaspar

Match Rank:7
Score:0.88
Offset:-2
Orientation:forward strand
Alignment:--GCCHATAAAA----
CTACCAATAAAATTCT
 A C G T A C G T C T A G T A G C G A T C G C A T C T G A A C G T C G T A G T C A G C T A C T G A A C G T A C G T A C G T A C G T
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

CDX1/MA0878.1/Jaspar

Match Rank:8
Score:0.88
Offset:1
Orientation:forward strand
Alignment:GCCHATAAAA
-GCAATAAAA
 C T A G T A G C G A T C G C A T C T G A A C G T C G T A G T C A G C T A C T G A
A C G T T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:9
Score:0.87
Offset:0
Orientation:reverse strand
Alignment:GCCHATAAAA
CCYMATAAAA
 C T A G T A G C G A T C G C A T C T G A A C G T C G T A G T C A G C T A C T G A
T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A

PH0057.1_Hoxb13/Jaspar

Match Rank:10
Score:0.87
Offset:-2
Orientation:forward strand
Alignment:--GCCHATAAAA----
AACCCAATAAAATTCG
 A C G T A C G T C T A G T A G C G A T C G C A T C T G A A C G T C G T A G T C A G C T A C T G A A C G T A C G T A C G T A C G T
T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G