Information for 1-NNCWRWGTAAACA (Motif 1)

C G T A T G C A G A T C G C A T C T G A C G A T C T A G G A C T G T C A T G C A C G T A A G T C C G T A
Reverse Opposite:
C G A T C T A G C G A T A C G T A C G T C T G A G A T C G C T A G A C T C G T A C T A G A C G T G C A T
p-value:1e-181
log p-value:-4.171e+02
Information Content per bp:1.617
Number of Target Sequences with motif394.0
Percentage of Target Sequences with motif50.84%
Number of Background Sequences with motif4621.9
Percentage of Background Sequences with motif9.91%
Average Position of motif in Targets49.8 +/- 20.9bp
Average Position of motif in Background49.9 +/- 32.3bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Foxa2/MA0047.2/Jaspar

Match Rank:1
Score:0.99
Offset:1
Orientation:reverse strand
Alignment:NNCWRWGTAAACA
-NCTAAGTAAACA
 C G T A T G C A G A T C G C A T C T G A C G A T C T A G G A C T G T C A T G C A C G T A A G T C C G T A
A C G T T A G C G T A C G C A T T C G A C G T A C T A G A G C T G T C A T G C A C G T A A G T C C G T A

FOXA1/MA0148.3/Jaspar

Match Rank:2
Score:0.98
Offset:2
Orientation:reverse strand
Alignment:NNCWRWGTAAACA----
--CAAAGTAAACANNNN
 C G T A T G C A G A T C G C A T C T G A C G A T C T A G G A C T G T C A T G C A C G T A A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T G T A C G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C G C T A C G A T T A C G T C A G C T G A

Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer

Match Rank:3
Score:0.98
Offset:1
Orientation:reverse strand
Alignment:NNCWRWGTAAACA---
-NCWRWGTAAACANSV
 C G T A T G C A G A T C G C A T C T G A C G A T C T A G G A C T G T C A T G C A C G T A A G T C C G T A A C G T A C G T A C G T
A C G T T G A C G A T C G C A T C T G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C G T A A T C G T C A G

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:4
Score:0.97
Offset:3
Orientation:forward strand
Alignment:NNCWRWGTAAACA
---AAAGTAAACA
 C G T A T G C A G A T C G C A T C T G A C G A T C T A G G A C T G T C A T G C A C G T A A G T C C G T A
A C G T A C G T A C G T G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:5
Score:0.97
Offset:3
Orientation:forward strand
Alignment:NNCWRWGTAAACA
---AAAGTAAACA
 C G T A T G C A G A T C G C A T C T G A C G A T C T A G G A C T G T C A T G C A C G T A A G T C C G T A
A C G T A C G T A C G T G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:6
Score:0.96
Offset:3
Orientation:reverse strand
Alignment:NNCWRWGTAAACA--
---TATGTAAACANG
 C G T A T G C A G A T C G C A T C T G A C G A T C T A G G A C T G T C A T G C A C G T A A G T C C G T A A C G T A C G T
A C G T A C G T A C G T G C A T T C G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C T G A T A C G

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:7
Score:0.95
Offset:-2
Orientation:forward strand
Alignment:--NNCWRWGTAAACA--
NNNVCTGWGYAAACASN
 A C G T A C G T C G T A T G C A G A T C G C A T C T G A C G A T C T A G G A C T G T C A T G C A C G T A A G T C C G T A A C G T A C G T
A T G C C T G A A T C G T A C G A G T C C G A T T C A G C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A T A C G C T G A

FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer

Match Rank:8
Score:0.94
Offset:3
Orientation:reverse strand
Alignment:NNCWRWGTAAACA
---WAAGTAAAYA
 C G T A T G C A G A T C G C A T C T G A C G A T C T A G G A C T G T C A T G C A C G T A A G T C C G T A
A C G T A C G T A C G T G C A T T C G A C T G A T C A G A G C T G T C A G T C A C T G A A G T C T G C A

FOXC2/MA0846.1/Jaspar

Match Rank:9
Score:0.92
Offset:3
Orientation:forward strand
Alignment:NNCWRWGTAAACA--
---TAAGTAAACAAA
 C G T A T G C A G A T C G C A T C T G A C G A T C T A G G A C T G T C A T G C A C G T A A G T C C G T A A C G T A C G T
A C G T A C G T A C G T G C A T C T G A G C T A T C A G G A C T G T C A G T C A C T G A A G T C C T G A G C T A G C T A

FOXC1/MA0032.2/Jaspar

Match Rank:10
Score:0.92
Offset:3
Orientation:forward strand
Alignment:NNCWRWGTAAACA-
---TATGTAAATAT
 C G T A T G C A G A T C G C A T C T G A C G A T C T A G G A C T G T C A T G C A C G T A A G T C C G T A A C G T
A C G T A C G T A C G T G C A T C T G A C G A T T C A G G C A T G T C A G T C A C T G A A G C T C T G A G C A T