Information for 9-SCCTTTGGCT (Motif 6)

A T C G A G T C G T A C G C A T A C G T A G C T C T A G C T A G A G T C C G A T
Reverse Opposite:
C G T A C T A G A G T C A G T C C T G A G T C A C G T A C A T G A C T G A T G C
p-value:1e-11
log p-value:-2.700e+01
Information Content per bp:1.816
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif2.98%
Number of Background Sequences with motif203.8
Percentage of Background Sequences with motif0.44%
Average Position of motif in Targets50.5 +/- 28.3bp
Average Position of motif in Background51.9 +/- 28.0bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TFAP2C(var.2)/MA0814.1/Jaspar

Match Rank:1
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-SCCTTTGGCT
NGCCTNAGGCN
 A C G T A T C G A G T C G T A C G C A T A C G T A G C T C T A G C T A G A G T C C G A T
G C A T A T C G A T G C A G T C A G C T A T C G T C G A T C A G A T C G A T G C C A G T

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:2
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-SCCTTTGGCT
TGCCTGAGGCN
 A C G T A T C G A G T C G T A C G C A T A C G T A G C T C T A G C T A G A G T C C G A T
G C A T A T C G A T G C A G T C A C G T A T C G T C G A T C A G A T C G A T G C C A G T

NFY(CCAAT)/Promoter/Homer

Match Rank:3
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:SCCTTTGGCT
CCGATTGGCT
 A T C G A G T C G T A C G C A T A C G T A G C T C T A G C T A G A G T C C G A T
A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T

TFAP2A/MA0003.3/Jaspar

Match Rank:4
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-SCCTTTGGCT
NGCCTGAGGCN
 A C G T A T C G A G T C G T A C G C A T A C G T A G C T C T A G C T A G A G T C C G A T
G C A T A T C G A T G C A G T C A C G T A T C G T C G A T C A G A T C G A T G C C A T G

Sox3/MA0514.1/Jaspar

Match Rank:5
Score:0.65
Offset:1
Orientation:forward strand
Alignment:SCCTTTGGCT-
-CCTTTGTTTT
 A T C G A G T C G T A C G C A T A C G T A G C T C T A G C T A G A G T C C G A T A C G T
A C G T A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T

Sox2/MA0143.3/Jaspar

Match Rank:6
Score:0.65
Offset:1
Orientation:forward strand
Alignment:SCCTTTGGCT
-CCTTTGTT-
 A T C G A G T C G T A C G C A T A C G T A G C T C T A G C T A G A G T C C G A T
A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:7
Score:0.64
Offset:1
Orientation:forward strand
Alignment:SCCTTTGGCT
-CCWTTGTY-
 A T C G A G T C G T A C G C A T A C G T A G C T C T A G C T A G A G T C C G A T
A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:8
Score:0.64
Offset:4
Orientation:forward strand
Alignment:SCCTTTGGCT
----TTGGCA
 A T C G A G T C G T A C G C A T A C G T A G C T C T A G C T A G A G T C C G A T
A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A

NFIX/MA0671.1/Jaspar

Match Rank:9
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:SCCTTTGGCT--
---NTTGGCANN
 A T C G A G T C G T A C G C A T A C G T A G C T C T A G C T A G A G T C C G A T A C G T A C G T
A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

PB0166.1_Sox12_2/Jaspar

Match Rank:10
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--SCCTTTGGCT----
ANTCCTTTGTCTNNNN
 A C G T A C G T A T C G A G T C G T A C G C A T A C G T A G C T C T A G C T A G A G T C C G A T A C G T A C G T A C G T A C G T
C G T A G C A T A C G T A G T C A T G C C G A T A G C T C G A T T C A G A C G T T A G C G A C T T C A G G C A T A C G T A C G T