Information for 5-TTTTATGAGA (Motif 5)

C A G T A C G T A C G T A G C T C T G A C G A T C T A G C G T A C A T G T G C A
Reverse Opposite:
A C G T G T A C C G A T G A T C C G T A A G C T C T G A C G T A C G T A G T C A
p-value:1e-14
log p-value:-3.408e+01
Information Content per bp:1.844
Number of Target Sequences with motif28.0
Percentage of Target Sequences with motif3.68%
Number of Background Sequences with motif241.4
Percentage of Background Sequences with motif0.51%
Average Position of motif in Targets51.7 +/- 28.3bp
Average Position of motif in Background48.9 +/- 27.4bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0068.1_Hoxc13/Jaspar

Match Rank:1
Score:0.88
Offset:-3
Orientation:reverse strand
Alignment:---TTTTATGAGA---
NAATTTTACGAGNTNN
 A C G T A C G T A C G T C A G T A C G T A C G T A G C T C T G A C G A T C T A G C G T A C A T G T G C A A C G T A C G T A C G T
G C T A C T G A C G T A C G A T C G A T C G A T C G A T C T G A G A T C C T A G C T G A A T C G T G A C C G A T C G A T C G A T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:2
Score:0.87
Offset:0
Orientation:reverse strand
Alignment:TTTTATGAGA
TTTTATTRGN
 C A G T A C G T A C G T A G C T C T G A C G A T C T A G C G T A C A T G T G C A
C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:3
Score:0.85
Offset:0
Orientation:forward strand
Alignment:TTTTATGAGA
TTTTATKRGG
 C A G T A C G T A C G T A G C T C T G A C G A T C T A G C G T A C A T G T G C A
C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G

HOXC13/MA0907.1/Jaspar

Match Rank:4
Score:0.84
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATGAGA
NTTTTACGAGN
 A C G T C A G T A C G T A C G T A G C T C T G A C G A T C T A G C G T A C A T G T G C A
C G A T C G A T C G A T C G A T G C A T G T C A A G T C C T A G T C G A A T C G T G A C

PH0048.1_Hoxa13/Jaspar

Match Rank:5
Score:0.84
Offset:-3
Orientation:reverse strand
Alignment:---TTTTATGAGA---
ANATTTTACGAGNNNN
 A C G T A C G T A C G T C A G T A C G T A C G T A G C T C T G A C G A T C T A G C G T A C A T G T G C A A C G T A C G T A C G T
G C T A T C G A C G T A C G A T C A G T C G A T C G A T C T G A A G T C C T A G C T G A A T C G T A C G C G A T G C A T C G A T

HOXD13/MA0909.1/Jaspar

Match Rank:6
Score:0.83
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATGAGA
NTTTTATTGG-
 A C G T C A G T A C G T A C G T A G C T C T G A C G A T C T A G C G T A C A T G T G C A
C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G A C G T

HOXC10/MA0905.1/Jaspar

Match Rank:7
Score:0.81
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATGAGA
NTTTTACGAC-
 A C G T C A G T A C G T A C G T A G C T C T G A C G A T C T A G C G T A C A T G T G C A
C G T A C G A T G C A T G C A T C G A T C G T A G A T C C A T G C T G A A G T C A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:8
Score:0.79
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATGAGA
TTTTTATTGG-
 A C G T C A G T A C G T A C G T A G C T C T G A C G A T C T A G C G T A C A T G T G C A
C A G T A C G T A C G T C G A T C G A T C G T A C G A T C A G T T C A G A T C G A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:9
Score:0.79
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATGAGA
NTTTTATGAC-
 A C G T C A G T A C G T A C G T A G C T C T G A C G A T C T A G C G T A C A T G T G C A
C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C A C G T

HOXB13/MA0901.1/Jaspar

Match Rank:10
Score:0.78
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATGAGA
NTTTTATTGG-
 A C G T C A G T A C G T A C G T A G C T C T G A C G A T C T A G C G T A C A T G T G C A
C A T G C A G T C A G T C G A T G C A T C T G A G C A T C A G T C T A G A T C G A C G T