Information for 20-GCCTGGCTGG (Motif 46)

A C T G A G T C A G T C A C G T A C T G A C T G A G T C A C G T A C T G A C T G
Reverse Opposite:
A G T C A G T C C G T A A C T G A G T C A G T C C G T A A C T G A C T G A G T C
p-value:1e-5
log p-value:-1.309e+01
Information Content per bp:1.530
Number of Target Sequences with motif99.0
Percentage of Target Sequences with motif13.22%
Number of Background Sequences with motif3966.6
Percentage of Background Sequences with motif8.19%
Average Position of motif in Targets50.3 +/- 26.6bp
Average Position of motif in Background50.6 +/- 29.8bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.73
Offset:-5
Orientation:forward strand
Alignment:-----GCCTGGCTGG
GTCATGCHTGRCTGS
 A C G T A C G T A C G T A C G T A C G T A C T G A G T C A G T C A C G T A C T G A C T G A G T C A C G T A C T G A C T G
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:2
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---GCCTGGCTGG--
GGGGCTYGKCTGGGA
 A C G T A C G T A C G T A C T G A G T C A G T C A C G T A C T G A C T G A G T C A C G T A C T G A C T G A C G T A C G T
C T A G C A T G C A T G T A C G A G T C G C A T A G C T C T A G A C G T A G T C G A C T A C T G A C T G A C T G T C G A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.66
Offset:2
Orientation:forward strand
Alignment:GCCTGGCTGG
--CTGTCTGG
 A C T G A G T C A G T C A C G T A C T G A C T G A G T C A C G T A C T G A C T G
A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.64
Offset:2
Orientation:forward strand
Alignment:GCCTGGCTGG
--TWGTCTGV
 A C T G A G T C A G T C A C G T A C T G A C T G A G T C A C G T A C T G A C T G
A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.64
Offset:-6
Orientation:reverse strand
Alignment:------GCCTGGCTGG
NGTCACGCTTGGCTGC
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A G T C A C G T A C T G A C T G A G T C A C G T A C T G A C T G
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C

PB0060.1_Smad3_1/Jaspar

Match Rank:6
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--GCCTGGCTGG-----
NNTNNTGTCTGGNNTNG
 A C G T A C G T A C T G A G T C A G T C A C G T A C T G A C T G A G T C A C G T A C T G A C T G A C G T A C G T A C G T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:7
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GCCTGGCTGG---
-CGTGGGTGGTCC
 A C T G A G T C A G T C A C G T A C T G A C T G A G T C A C G T A C T G A C T G A C G T A C G T A C G T
A C G T A G T C A T C G G C A T C T A G A C T G T A C G C G A T T C A G C A T G A G C T T A G C G A T C

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GCCTGGCTGG
VBSYGTCTGG
 A C T G A G T C A G T C A C G T A C T G A C T G A G T C A C G T A C T G A C T G
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

POL010.1_DCE_S_III/Jaspar

Match Rank:9
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:GCCTGGCTGG
----NGCTN-
 A C T G A G T C A G T C A C G T A C T G A C T G A G T C A C G T A C T G A C T G
A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:10
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GCCTGGCTGG
GGTCTGGCAT-
 A C G T A C T G A G T C A G T C A C G T A C T G A C T G A G T C A C G T A C T G A C T G
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T