Information for 22-ATGACCTACTTCCCTG (Motif 40)

C G T A A C G T A C T G C G T A A G T C A G T C A C G T C G T A A T G C A C G T A G C T A G T C G T A C A G T C A C G T A C T G
Reverse Opposite:
A G T C C G T A A C T G A C T G C T A G C T G A C G T A A T C G A C G T C G T A A C T G T A C G A C G T A G T C C G T A A C G T
p-value:1e-8
log p-value:-1.988e+01
Information Content per bp:1.929
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.53%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets38.8 +/- 24.6bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:1
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:ATGACCTACTTCCCTG
-TGACCTARTT-----
 C G T A A C G T A C T G C G T A A G T C A G T C A C G T C G T A A T G C A C G T A G C T A G T C G T A C A G T C A C G T A C T G
A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T A C G T A C G T A C G T A C G T A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:2
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:ATGACCTACTTCCCTG
TTGACCTANTTATN--
 C G T A A C G T A C T G C G T A A G T C A G T C A C G T C G T A A T G C A C G T A G C T A G T C G T A C A G T C A C G T A C T G
A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:3
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:ATGACCTACTTCCCTG
-TGACCTTGAT-----
 C G T A A C G T A C T G C G T A A G T C A G T C A C G T C G T A A T G C A C G T A G C T A G T C G T A C A G T C A C G T A C T G
A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T A C G T A C G T A C G T A C G T A C G T

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:4
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:ATGACCTACTTCCCTG-
-TGACCCAGTGACCTAC
 C G T A A C G T A C T G C G T A A G T C A G T C A C G T C G T A A T G C A C G T A G C T A G T C G T A C A G T C A C G T A C T G A C G T
A C G T G C A T T A C G G C T A A T G C G T A C A G T C T G C A T A C G C G A T C A T G T G C A T G A C G A T C G A C T T C G A T A G C

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:5
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:ATGACCTACTTCCCTG
-TGACCT---------
 C G T A A C G T A C T G C G T A A G T C A G T C A C G T C G T A A T G C A C G T A G C T A G T C G T A C A G T C A C G T A C T G
A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Nr2f6(var.2)/MA0728.1/Jaspar

Match Rank:6
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:ATGACCTACTTCCCTG
-TGACCTTTTGACCTC
 C G T A A C G T A C T G C G T A A G T C A G T C A C G T C G T A A T G C A C G T A G C T A G T C G T A C A G T C A C G T A C T G
A C G T A G C T C T A G C G T A G T A C A G T C A C G T G A C T G C A T C A G T T C A G G T C A A G T C A G T C G A C T A G T C

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:7
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:ATGACCTACTTCCCTG
-----NNACTTGCCTT
 C G T A A C G T A C T G C G T A A G T C A G T C A C G T C G T A A T G C A C G T A G C T A G T C G T A C A G T C A C G T A C T G
A C G T A C G T A C G T A C G T A C G T T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:8
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-ATGACCTACTTCCCTG
CATGAC-----------
 A C G T C G T A A C G T A C T G C G T A A G T C A G T C A C G T C G T A A T G C A C G T A G C T A G T C G T A C A G T C A C G T A C T G
T A G C T C G A A C G T C A T G C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

RARA/MA0729.1/Jaspar

Match Rank:9
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--ATGACCTACTTCCCTG
CATTGACCTTTTGACCTC
 A C G T A C G T C G T A A C G T A C T G C G T A A G T C A G T C A C G T C G T A A T G C A C G T A G C T A G T C G T A C A G T C A C G T A C T G
T G A C G T C A C G A T A G C T C T A G C G T A G T A C G T A C A C G T G C A T G C A T A G C T A T C G T C G A G T A C A G T C A G C T G A T C

Rarb/MA0857.1/Jaspar

Match Rank:10
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:ATGACCTACTTCCCTG-
-TGACCTTTTGACCTTT
 C G T A A C G T A C T G C G T A A G T C A G T C A C G T C G T A A T G C A C G T A G C T A G T C G T A C A G T C A C G T A C T G A C G T
A C G T G A C T T C A G T C G A T G A C A G T C A G C T G A C T C G A T A G C T T A C G G T C A T G A C G T A C A G C T G A C T C G A T