Information for 19-YWRGSCATAMTAC (Motif 29)

A G T C C G A T C T A G A C T G A T G C A G T C C G T A A G C T C T G A G T A C A C G T C G T A G T A C
Reverse Opposite:
A C T G A C G T C G T A A C T G G A C T T C G A A C G T C T A G A T C G G T A C G A T C C G T A C T A G
p-value:1e-9
log p-value:-2.094e+01
Information Content per bp:1.813
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.80%
Number of Background Sequences with motif6.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets47.2 +/- 21.3bp
Average Position of motif in Background55.0 +/- 15.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF410/MA0752.1/Jaspar

Match Rank:1
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--YWRGSCATAMTAC--
TCCATCCCATAATACTC
 A C G T A C G T A G T C C G A T C T A G A C T G A T G C A G T C C G T A A G C T C T G A G T A C A C G T C G T A G T A C A C G T A C G T
A C G T T G A C G A T C G C T A C A G T G T A C G T A C A T G C G T C A A G C T G T C A T C G A G A C T C T G A G T A C A G C T G T A C

CDX2/MA0465.1/Jaspar

Match Rank:2
Score:0.60
Offset:1
Orientation:forward strand
Alignment:YWRGSCATAMTAC
-AAGCCATAAAA-
 A G T C C G A T C T A G A C T G A T G C A G T C C G T A A G C T C T G A G T A C A C G T C G T A G T A C
A C G T T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:3
Score:0.58
Offset:3
Orientation:forward strand
Alignment:YWRGSCATAMTAC
---GTCATAAAAN
 A G T C C G A T C T A G A C T G A T G C A G T C C G T A A G C T C T G A G T A C A C G T C G T A G T A C
A C G T A C G T A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T

PH0064.1_Hoxb9/Jaspar

Match Rank:4
Score:0.56
Offset:0
Orientation:forward strand
Alignment:YWRGSCATAMTAC---
AGAGCCATAAAATTCG
 A G T C C G A T C T A G A C T G A T G C A G T C C G T A A G C T C T G A G T A C A C G T C G T A G T A C A C G T A C G T A C G T
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:5
Score:0.55
Offset:2
Orientation:forward strand
Alignment:YWRGSCATAMTAC-
--GGCCATAAATCA
 A G T C C G A T C T A G A C T G A T G C A G T C C G T A A G C T C T G A G T A C A C G T C G T A G T A C A C G T
A C G T A C G T C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A

CDX1/MA0878.1/Jaspar

Match Rank:6
Score:0.54
Offset:3
Orientation:forward strand
Alignment:YWRGSCATAMTAC
---GCAATAAAA-
 A G T C C G A T C T A G A C T G A T G C A G T C C G T A A G C T C T G A G T A C A C G T C G T A G T A C
A C G T A C G T A C G T T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T

HIC2/MA0738.1/Jaspar

Match Rank:7
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-YWRGSCATAMTAC
NGTGGGCAT-----
 A C G T A G T C C G A T C T A G A C T G A T G C A G T C C G T A A G C T C T G A G T A C A C G T C G T A G T A C
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T A C G T A C G T A C G T

PH0013.1_Cdx2/Jaspar

Match Rank:8
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-YWRGSCATAMTAC--
AAAGGTAATAAAATTT
 A C G T A G T C C G A T C T A G A C T G A T G C A G T C C G T A A G C T C T G A G T A C A C G T C G T A G T A C A C G T A C G T
C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T

PH0148.1_Pou3f3/Jaspar

Match Rank:9
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---YWRGSCATAMTAC-
AAAATATGCATAATAAA
 A C G T A C G T A C G T A G T C C G A T C T A G A C T G A T G C A G T C C G T A A G C T C T G A G T A C A C G T C G T A G T A C A C G T
G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:10
Score:0.52
Offset:2
Orientation:forward strand
Alignment:YWRGSCATAMTAC-
--GGCCATAAATCA
 A G T C C G A T C T A G A C T G A T G C A G T C C G T A A G C T C T G A G T A C A C G T C G T A G T A C A C G T
A C G T A C G T C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A