Information for 1-GAVAGAGTAAACA (Motif 2)

C T A G T C G A T C A G C T G A A C T G C T G A T A C G A C G T C T G A G C T A C G T A A G T C C G T A
Reverse Opposite:
C G A T T C A G G C A T C A G T G A C T T G C A A T G C G A C T G T A C G A C T A G T C A G C T A G T C
p-value:1e-18
log p-value:-4.273e+01
Information Content per bp:1.634
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif3.87%
Number of Background Sequences with motif194.6
Percentage of Background Sequences with motif0.40%
Average Position of motif in Targets55.5 +/- 24.3bp
Average Position of motif in Background44.0 +/- 27.4bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.79
Offset:3
Orientation:forward strand
Alignment:GAVAGAGTAAACA
---AAAGTAAACA
 C T A G T C G A T C A G C T G A A C T G C T G A T A C G A C G T C T G A G C T A C G T A A G T C C G T A
A C G T A C G T A C G T G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:2
Score:0.79
Offset:3
Orientation:forward strand
Alignment:GAVAGAGTAAACA
---AAAGTAAACA
 C T A G T C G A T C A G C T G A A C T G C T G A T A C G A C G T C T G A G C T A C G T A A G T C C G T A
A C G T A C G T A C G T G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A

Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer

Match Rank:3
Score:0.78
Offset:1
Orientation:reverse strand
Alignment:GAVAGAGTAAACA---
-NCWRWGTAAACANSV
 C T A G T C G A T C A G C T G A A C T G C T G A T A C G A C G T C T G A G C T A C G T A A G T C C G T A A C G T A C G T A C G T
A C G T T G A C G A T C G C A T C T G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C G T A A T C G T C A G

FOXL1/MA0033.2/Jaspar

Match Rank:4
Score:0.78
Offset:6
Orientation:forward strand
Alignment:GAVAGAGTAAACA
------GTAAACA
 C T A G T C G A T C A G C T G A A C T G C T G A T A C G A C G T C T G A G C T A C G T A A G T C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T C T A G G A C T T G C A G T C A T G C A A G T C G T C A

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:5
Score:0.77
Offset:3
Orientation:reverse strand
Alignment:GAVAGAGTAAACA--
---TATGTAAACANG
 C T A G T C G A T C A G C T G A A C T G C T G A T A C G A C G T C T G A G C T A C G T A A G T C C G T A A C G T A C G T
A C G T A C G T A C G T G C A T T C G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C T G A T A C G

FOXO4/MA0848.1/Jaspar

Match Rank:6
Score:0.77
Offset:6
Orientation:forward strand
Alignment:GAVAGAGTAAACA
------GTAAACA
 C T A G T C G A T C A G C T G A A C T G C T G A T A C G A C G T C T G A G C T A C G T A A G T C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T T C A G C G A T T G C A G T C A C T G A G A T C C G T A

FOXI1/MA0042.2/Jaspar

Match Rank:7
Score:0.77
Offset:6
Orientation:forward strand
Alignment:GAVAGAGTAAACA
------GTAAACA
 C T A G T C G A T C A G C T G A A C T G C T G A T A C G A C G T C T G A G C T A C G T A A G T C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T T C A G G C A T T G C A G T C A C G T A G A T C T C G A

FOXA1/MA0148.3/Jaspar

Match Rank:8
Score:0.77
Offset:2
Orientation:reverse strand
Alignment:GAVAGAGTAAACA----
--CAAAGTAAACANNNN
 C T A G T C G A T C A G C T G A A C T G C T G A T A C G A C G T C T G A G C T A C G T A A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T G T A C G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C G C T A C G A T T A C G T C A G C T G A

FOXP2/MA0593.1/Jaspar

Match Rank:9
Score:0.77
Offset:4
Orientation:forward strand
Alignment:GAVAGAGTAAACA--
----AAGTAAACAAA
 C T A G T C G A T C A G C T G A A C T G C T G A T A C G A C G T C T G A G C T A C G T A A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T C T G A C G T A C T A G C G A T C G T A C G T A C G T A A G T C C G T A T C G A C T G A

FOXD2/MA0847.1/Jaspar

Match Rank:10
Score:0.77
Offset:6
Orientation:forward strand
Alignment:GAVAGAGTAAACA
------GTAAACA
 C T A G T C G A T C A G C T G A A C T G C T G A T A C G A C G T C T G A G C T A C G T A A G T C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T T C A G G A C T G T C A G T C A C G T A A G T C C T G A