Information for 9-AAARAAYATKGSCAAA (Motif 13)

C G T A G T C A C G T A C T A G C G T A C G T A A G T C G T C A A C G T C A G T A T C G T A C G G T A C C G T A G C T A G T C A
Reverse Opposite:
C A G T C A G T A C G T A C T G A T G C T A G C G T C A G T C A A C G T C T A G A C G T A C G T A G T C A C G T C A G T A C G T
p-value:1e-11
log p-value:-2.748e+01
Information Content per bp:1.754
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.80%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets34.5 +/- 27.4bp
Average Position of motif in Background34.5 +/- 6.5bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:1
Score:0.62
Offset:-6
Orientation:forward strand
Alignment:------AAARAAYATKGSCAAA
TACTGGAAAAAAAA--------
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A G T C A C G T A C T A G C G T A C G T A A G T C G T C A A C G T C A G T A T C G T A C G G T A C C G T A G C T A G T C A
G C A T C T G A T G A C C A G T A C G T T C A G C G T A C G T A T C G A T C G A G C T A G T C A C G T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Foxd3/MA0041.1/Jaspar

Match Rank:2
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-AAARAAYATKGSCAAA
AAACAAACATTC-----
 A C G T C G T A G T C A C G T A C T A G C G T A C G T A A G T C G T C A A C G T C A G T A T C G T A C G G T A C C G T A G C T A G T C A
C T G A T G C A C T G A G A T C G T C A C G T A C G T A G A T C C T G A C G A T C G A T G A T C A C G T A C G T A C G T A C G T A C G T

PB0093.1_Zfp105_1/Jaspar

Match Rank:3
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---AAARAAYATKGSCAAA
AACAAACAACAAGAG----
 A C G T A C G T A C G T C G T A G T C A C G T A C T A G C G T A C G T A A G T C G T C A A C G T C A G T A T C G T A C G G T A C C G T A G C T A G T C A
G C T A C G T A G A T C G T C A C G T A G C T A G A T C C T G A C G T A G T A C C T G A G C T A C A T G C G T A C T A G A C G T A C G T A C G T A C G T

PB0182.1_Srf_2/Jaspar

Match Rank:4
Score:0.57
Offset:-6
Orientation:forward strand
Alignment:------AAARAAYATKGSCAAA
GTTAAAAAAAAAAATTA-----
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A G T C A C G T A C T A G C G T A C G T A A G T C G T C A A C G T C A G T A T C G T A C G G T A C C G T A G C T A G T C A
T A C G A C G T C G A T C G T A C T G A C T G A T G C A T G C A G T C A G C T A G T C A G T C A G T C A T G C A A C G T G C A T G C A T A C G T A C G T A C G T A C G T A C G T

Arid5a/MA0602.1/Jaspar

Match Rank:5
Score:0.56
Offset:2
Orientation:forward strand
Alignment:AAARAAYATKGSCAAA
--CTAATATTGCTAAA
 C G T A G T C A C G T A C T A G C G T A C G T A A G T C G T C A A C G T C A G T A T C G T A C G G T A C C G T A G C T A G T C A
A C G T A C G T T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

PB0002.1_Arid5a_1/Jaspar

Match Rank:6
Score:0.56
Offset:2
Orientation:forward strand
Alignment:AAARAAYATKGSCAAA
--CTAATATTGCTAAA
 C G T A G T C A C G T A C T A G C G T A C G T A A G T C G T C A A C G T C A G T A T C G T A C G G T A C C G T A G C T A G T C A
A C G T A C G T T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

PB0116.1_Elf3_2/Jaspar

Match Rank:7
Score:0.55
Offset:-6
Orientation:forward strand
Alignment:------AAARAAYATKGSCAAA
GTTCAAAAAAAAAATTC-----
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A G T C A C G T A C T A G C G T A C G T A A G T C G T C A A C G T C A G T A T C G T A C G G T A C C G T A G C T A G T C A
C A T G A G C T A C G T G T A C G T C A C G T A G C T A G C T A G C T A G C T A G C T A G C T A G C T A G T C A G A C T C G A T G A T C A C G T A C G T A C G T A C G T A C G T

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:8
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:AAARAAYATKGSCAAA
-AAGGATATNTN----
 C G T A G T C A C G T A C T A G C G T A C G T A A G T C G T C A A C G T C A G T A T C G T A C G G T A C C G T A G C T A G T C A
A C G T T C G A C G T A C T A G T A C G C G T A A G C T C G T A A C G T A G T C C G A T C G A T A C G T A C G T A C G T A C G T

PB0119.1_Foxa2_2/Jaspar

Match Rank:9
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--AAARAAYATKGSCAAA
AAAAATAACAAACGG---
 A C G T A C G T C G T A G T C A C G T A C T A G C G T A C G T A A G T C G T C A A C G T C A G T A T C G T A C G G T A C C G T A G C T A G T C A
T C G A T C G A C G T A C G T A G T C A A C G T C T G A C G T A G A T C G T C A G C T A C T G A T A G C T A C G A T C G A C G T A C G T A C G T

PB0121.1_Foxj3_2/Jaspar

Match Rank:10
Score:0.50
Offset:-4
Orientation:forward strand
Alignment:----AAARAAYATKGSCAAA
AACACCAAAACAAAGGA---
 A C G T A C G T A C G T A C G T C G T A G T C A C G T A C T A G C G T A C G T A A G T C G T C A A C G T C A G T A T C G T A C G G T A C C G T A G C T A G T C A
G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A A C G T A C G T A C G T