Information for 22-CAAAGGGTAATAC (Motif 40)

A G T C C G T A C G T A C T G A A C T G A C T G A C T G A C G T G T C A C G T A A C G T C G T A A G T C
Reverse Opposite:
A C T G A C G T G T C A A C G T A C G T C G T A A G T C G T A C A G T C A G C T A C G T A C G T A C T G
p-value:1e-8
log p-value:-1.999e+01
Information Content per bp:1.933
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.56%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets51.0 +/- 23.5bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2/MA0143.3/Jaspar

Match Rank:1
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CAAAGGGTAATAC
AACAAAGG-------
 A C G T A C G T A G T C C G T A C G T A C T G A A C T G A C T G A C T G A C G T G T C A C G T A A C G T C G T A A G T C
T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:2
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CAAAGGGTAATAC
RACAAWGG-------
 A C G T A C G T A G T C C G T A C G T A C T G A A C T G A C T G A C T G A C G T G T C A C G T A A C G T C G T A A G T C
T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:3
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----CAAAGGGTAATAC
AAAACAAAGG-------
 A C G T A C G T A C G T A C G T A G T C C G T A C G T A C T G A A C T G A C T G A C T G A C G T G T C A C G T A A C G T C G T A A G T C
T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Rarg/MA0859.1/Jaspar

Match Rank:4
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----CAAAGGGTAATAC
AAGGTCAAAAGGTCAA--
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A C T G A A C T G A C T G A C T G A C G T G T C A C G T A A C G T C G T A A G T C
T C G A T C G A C T A G A C T G A C G T A G T C T C G A C G T A C T G A T C G A A C T G A C T G A C G T A G T C T C G A G C T A A C G T A C G T

PB0082.1_Tcf3_1/Jaspar

Match Rank:5
Score:0.56
Offset:-7
Orientation:forward strand
Alignment:-------CAAAGGGTAATAC
TATAGATCAAAGGAAAA---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A C T G A A C T G A C T G A C T G A C G T G T C A C G T A A C G T C G T A A G T C
G A C T G C T A G C A T C G T A A T C G C G T A G C A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G C T A G C T A G C T A A C G T A C G T A C G T

PB0040.1_Lef1_1/Jaspar

Match Rank:6
Score:0.56
Offset:-7
Orientation:reverse strand
Alignment:-------CAAAGGGTAATAC
NANAGATCAAAGGGNNN---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A C T G A A C T G A C T G A C T G A C G T G T C A C G T A A C G T C G T A A G T C
A C T G G C T A G C A T C G T A A T C G C G T A C G A T T A G C C G T A C G T A C G T A T C A G T C A G T C A G G C T A G A C T G A C T A C G T A C G T A C G T

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:7
Score:0.56
Offset:-7
Orientation:reverse strand
Alignment:-------CAAAGGGTAATAC
NNNAGATCAAAGGANNN---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A C T G A A C T G A C T G A C T G A C G T G T C A C G T A A C G T C G T A A G T C
A C G T G C T A G C A T C G T A A T C G C G T A C G A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G T C A G C T A G C A T A C G T A C G T A C G T

Spz1/MA0111.1/Jaspar

Match Rank:8
Score:0.56
Offset:3
Orientation:forward strand
Alignment:CAAAGGGTAATAC-
---AGGGTAACAGC
 A G T C C G T A C G T A C T G A A C T G A C T G A C T G A C G T G T C A C G T A A C G T C G T A A G T C A C G T
A C G T A C G T A C G T C T G A A T C G C T A G A C T G C A G T C G T A C G T A T A G C C T G A A C T G T A G C

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:9
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----CAAAGGGTAATAC
ACATCAAAGG-------
 A C G T A C G T A C G T A C G T A G T C C G T A C G T A C T G A A C T G A C T G A C T G A C G T G T C A C G T A A C G T C G T A A G T C
C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0049.1_Nr2f2_1/Jaspar

Match Rank:10
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CAAAGGGTAATAC-
TCTCAAAGGTCACGAG
 A C G T A C G T A G T C C G T A C G T A C T G A A C T G A C T G A C T G A C G T G T C A C G T A A C G T C G T A A G T C A C G T
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G