Information for 16-AGTTAGGAGGCTTTAT (Motif 28)

C G T A A C T G C G A T A C G T T C G A A C T G A T C G C G T A A C T G C T A G A T G C A C G T A C G T A C G T G T C A G C A T
Reverse Opposite:
C G T A C A G T T C G A G T C A C G T A A T C G A G T C T G A C C G A T A T G C T A G C A C G T T G C A C G T A G T A C C G A T
p-value:1e-9
log p-value:-2.262e+01
Information Content per bp:1.691
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.39%
Number of Background Sequences with motif33.1
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets42.6 +/- 21.7bp
Average Position of motif in Background44.8 +/- 24.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer

Match Rank:1
Score:0.53
Offset:-6
Orientation:forward strand
Alignment:------AGTTAGGAGGCTTTAT
ACTYKNATTCGTGNTACTTC--
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G C G A T A C G T T C G A A C T G A T C G C G T A A C T G C T A G A T G C A C G T A C G T A C G T G T C A G C A T
C T G A G T A C G A C T A G T C C A G T T G C A C T G A A C G T A G C T G A T C C T A G C G A T A C T G A T G C G A C T C T G A G A T C G A C T A G C T G A T C A C G T A C G T

Nr2e3/MA0164.1/Jaspar

Match Rank:2
Score:0.52
Offset:7
Orientation:reverse strand
Alignment:AGTTAGGAGGCTTTAT
-------AAGCTTG--
 C G T A A C T G C G A T A C G T T C G A A C T G A T C G C G T A A C T G C T A G A T G C A C G T A C G T A C G T G T C A G C A T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G A T G C A C G T A C G T C T A G A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:3
Score:0.51
Offset:8
Orientation:reverse strand
Alignment:AGTTAGGAGGCTTTAT
--------NGCTN---
 C G T A A C T G C G A T A C G T T C G A A C T G A T C G C G T A A C T G C T A G A T G C A C G T A C G T A C G T G T C A G C A T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T

PH0115.1_Nkx2-6/Jaspar

Match Rank:4
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--AGTTAGGAGGCTTTAT
AATNTTAAGTGGNTNN--
 A C G T A C G T C G T A A C T G C G A T A C G T T C G A A C T G A T C G C G T A A C T G C T A G A T G C A C G T A C G T A C G T G T C A G C A T
C T G A C T G A C G A T A C T G G C A T A G C T C T G A C G T A A C T G C G A T C T A G A T C G G T A C G A C T G A C T G C T A A C G T A C G T

PH0113.1_Nkx2-4/Jaspar

Match Rank:5
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--AGTTAGGAGGCTTTAT
AATTTCAAGTGGCTTN--
 A C G T A C G T C G T A A C T G C G A T A C G T T C G A A C T G A T C G C G T A A C T G C T A G A T G C A C G T A C G T A C G T G T C A G C A T
C T G A C G T A C G A T A C G T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G A G T C G C A T G A C T C G T A A C G T A C G T

ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.50
Offset:-9
Orientation:forward strand
Alignment:---------AGTTAGGAGGCTTTAT
SMCAGTCWGAKGGAGGAGGC-----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G C G A T A C G T T C G A A C T G A T C G C G T A A C T G C T A G A T G C A C G T A C G T A C G T G T C A G C A T
A T C G T G A C A T G C C T G A T C A G G A C T A G T C C G A T T C A G T C G A C A T G C T A G C T A G C G T A C T A G C T A G C T G A C T A G C T A G A T G C A C G T A C G T A C G T A C G T A C G T

PB0203.1_Zfp691_2/Jaspar

Match Rank:7
Score:0.49
Offset:-1
Orientation:reverse strand
Alignment:-AGTTAGGAGGCTTTAT
NTNNNAGGAGTCTCNTN
 A C G T C G T A A C T G C G A T A C G T T C G A A C T G A T C G C G T A A C T G C T A G A T G C A C G T A C G T A C G T G T C A G C A T
A T C G C A G T A C G T G C T A C T A G C T G A A C T G A C T G C G T A A T C G A G C T G T A C G C A T T G A C T A C G G A C T G T C A

PH0114.1_Nkx2-5/Jaspar

Match Rank:8
Score:0.49
Offset:-2
Orientation:reverse strand
Alignment:--AGTTAGGAGGCTTTAT
AAATTCAAGTGGNTTN--
 A C G T A C G T C G T A A C T G C G A T A C G T T C G A A C T G A T C G C G T A A C T G C T A G A T G C A C G T A C G T A C G T G T C A G C A T
C T G A C T G A C G T A A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G T A C G A C T G A C T C G T A A C G T A C G T

PH0171.1_Nkx2-1/Jaspar

Match Rank:9
Score:0.48
Offset:-2
Orientation:reverse strand
Alignment:--AGTTAGGAGGCTTTAT
AANTTCAAGTGGCTTN--
 A C G T A C G T C G T A A C T G C G A T A C G T T C G A A C T G A T C G C G T A A C T G C T A G A T G C A C G T A C G T A C G T G T C A G C A T
C G T A C G T A C A G T A C G T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G T A G C G A C T A C G T T C G A A C G T A C G T

PH0048.1_Hoxa13/Jaspar

Match Rank:10
Score:0.47
Offset:-3
Orientation:reverse strand
Alignment:---AGTTAGGAGGCTTTAT
ANATTTTACGAGNNNN---
 A C G T A C G T A C G T C G T A A C T G C G A T A C G T T C G A A C T G A T C G C G T A A C T G C T A G A T G C A C G T A C G T A C G T G T C A G C A T
G C T A T C G A C G T A C G A T C A G T C G A T C G A T C T G A A G T C C T A G C T G A A T C G T A C G C G A T G C A T C G A T A C G T A C G T A C G T