Information for 11-GTTGGCAGAWACA (Motif 24)

A C T G G C A T C G A T A C T G C T A G G T A C C G T A C T A G C G T A C G A T T C G A A G T C C G T A
Reverse Opposite:
A C G T A C T G A C G T C G T A A C G T A G T C A C G T A C T G G A T C A G T C C G T A C G T A G T A C
p-value:1e-10
log p-value:-2.374e+01
Information Content per bp:1.768
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.67%
Number of Background Sequences with motif52.5
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets57.2 +/- 25.9bp
Average Position of motif in Background49.2 +/- 34.3bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GTTGGCAGAWACA
CTTGGCAA-----
 A C T G G C A T C G A T A C T G C T A G G T A C C G T A C T A G C G T A C G A T T C G A A G T C C G T A
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:2
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GTTGGCAGAWACA
RHTGWCAR-----
 A C T G G C A T C G A T A C T G C T A G G T A C C G T A C T A G C G T A C G A T T C G A A G T C C G T A
C T A G G T A C A G C T C T A G G C T A G A T C C G T A C T G A A C G T A C G T A C G T A C G T A C G T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:3
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GTTGGCAGAWACA
ARNTGACA------
 A C G T A C T G G C A T C G A T A C T G C T A G G T A C C G T A C T A G C G T A C G A T T C G A A G T C C G T A
T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A A C G T A C G T A C G T A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GTTGGCAGAWACA
AGGTGHCAGACA--
 A C G T A C T G G C A T C G A T A C T G C T A G G T A C C G T A C T A G C G T A C G A T T C G A A G T C C G T A
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:5
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GTTGGCAGAWACA
NNTTGGCANN----
 A C G T A C T G G C A T C G A T A C T G C T A G G T A C C G T A C T A G C G T A C G A T T C G A A G T C C G T A
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:6
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GTTGGCAGAWACA
-ATGCCAGACN--
 A C T G G C A T C G A T A C T G C T A G G T A C C G T A C T A G C G T A C G A T T C G A A G T C C G T A
A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:7
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GTTGGCAGAWACA
-TTGACAGC----
 A C T G G C A T C G A T A C T G C T A G G T A C C G T A C T A G C G T A C G A T T C G A A G T C C G T A
A C G T C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C A C G T A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:8
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GTTGGCAGAWACA
AGGTGNCAGACAG-
 A C G T A C T G G C A T C G A T A C T G C T A G G T A C C G T A C T A G C G T A C G A T T C G A A G T C C G T A
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T

Hic1/MA0739.1/Jaspar

Match Rank:9
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GTTGGCAGAWACA
GGTTGGCAT-----
 A C G T A C T G G C A T C G A T A C T G C T A G G T A C C G T A C T A G C G T A C G A T T C G A A G T C C G T A
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T A C G T A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:10
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GTTGGCAGAWACA
-TTGACAG-----
 A C T G G C A T C G A T A C T G C T A G G T A C C G T A C T A G C G T A C G A T T C G A A G T C C G T A
A C G T G C A T G C A T A T C G T G C A A G T C C T G A C T A G A C G T A C G T A C G T A C G T A C G T