Information for 3-GGMATAATGA (Motif 21)

A C T G A C T G G T C A G T C A A C G T G T C A C G T A A C G T A C T G C G T A
Reverse Opposite:
A C G T G T A C C G T A A C G T A C G T C G T A A C G T A C G T T G A C A G T C
p-value:1e-10
log p-value:-2.465e+01
Information Content per bp:1.827
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.67%
Number of Background Sequences with motif48.9
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets46.7 +/- 21.1bp
Average Position of motif in Background54.2 +/- 29.2bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POU6F2/MA0793.1/Jaspar

Match Rank:1
Score:0.78
Offset:3
Orientation:reverse strand
Alignment:GGMATAATGA---
---NTAATGAGCT
 A C T G A C T G G T C A G T C A A C G T G T C A C G T A A C G T A C T G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T C G T A C G A T T G C A C T G A C A G T C A T G G T C A C T A G A T G C G A C T

EMX1/MA0612.1/Jaspar

Match Rank:2
Score:0.77
Offset:2
Orientation:forward strand
Alignment:GGMATAATGA--
--CCTAATTACC
 A C T G A C T G G T C A G T C A A C G T G T C A C G T A A C G T A C T G C G T A A C G T A C G T
A C G T A C G T T G A C A G T C G A C T T C G A C G T A C G A T C A G T C T G A T A G C A G T C

EVX2/MA0888.1/Jaspar

Match Rank:3
Score:0.76
Offset:2
Orientation:reverse strand
Alignment:GGMATAATGA--
--NNTAATTANN
 A C T G A C T G G T C A G T C A A C G T G T C A C G T A A C G T A C T G C G T A A C G T A C G T
A C G T A C G T T A C G A T G C G A C T T C G A T G C A A G C T A C G T C T G A A T G C A T G C

MEOX2/MA0706.1/Jaspar

Match Rank:4
Score:0.75
Offset:2
Orientation:reverse strand
Alignment:GGMATAATGA--
--NTTAATTACN
 A C T G A C T G G T C A G T C A A C G T G T C A C G T A A C G T A C T G C G T A A C G T A C G T
A C G T A C G T A C T G G C A T G A C T T C G A G T C A C A G T A C G T C T G A A T G C G A C T

HOXB2/MA0902.1/Jaspar

Match Rank:5
Score:0.75
Offset:2
Orientation:reverse strand
Alignment:GGMATAATGA--
--NNTAATTANN
 A C T G A C T G G T C A G T C A A C G T G T C A C G T A A C G T A C T G C G T A A C G T A C G T
A C G T A C G T A C T G A G C T C G A T C T G A C G T A A G C T A C G T C T G A A T G C A G C T

PDX1/MA0132.2/Jaspar

Match Rank:6
Score:0.75
Offset:3
Orientation:reverse strand
Alignment:GGMATAATGA-
---CTAATTAN
 A C T G A C T G G T C A G T C A A C G T G T C A C G T A A C G T A C T G C G T A A C G T
A C G T A C G T A C G T A G T C A C G T C G T A C G T A A C G T A C G T C T G A A T G C

PH0175.1_Vax2/Jaspar

Match Rank:7
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:GGMATAATGA------
GNCTTAATTAGTGNNN
 A C T G A C T G G T C A G T C A A C G T G T C A C G T A A C G T A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C T G A G C T T G A C A G C T G A C T G T C A C G T A C G A T A C G T C T G A T C A G A G C T T A C G A G T C G C T A T G A C

EVX1/MA0887.1/Jaspar

Match Rank:8
Score:0.75
Offset:2
Orientation:reverse strand
Alignment:GGMATAATGA--
--GNTAATTANN
 A C T G A C T G G T C A G T C A A C G T G T C A C G T A A C G T A C T G C G T A A C G T A C G T
A C G T A C G T A T C G T A G C G A C T C T G A T G C A A G C T A G C T C T G A A T G C A G T C

NKX6-2/MA0675.1/Jaspar

Match Rank:9
Score:0.74
Offset:3
Orientation:reverse strand
Alignment:GGMATAATGA-
---TTAATTAN
 A C T G A C T G G T C A G T C A A C G T G T C A C G T A A C G T A C T G C G T A A C G T
A C G T A C G T A C G T C G A T G A C T C G T A C G T A C G A T C A G T C T G A T A C G

HOXB3/MA0903.1/Jaspar

Match Rank:10
Score:0.73
Offset:2
Orientation:reverse strand
Alignment:GGMATAATGA--
--NNTAATTANN
 A C T G A C T G G T C A G T C A A C G T G T C A C G T A A C G T A C T G C G T A A C G T A C G T
A C G T A C G T A C T G A G T C C G A T C T G A C T G A A G C T A C G T C T G A A T C G G A C T