Information for 6-GTTTTATGAG (Motif 9)

T C A G C A G T C A G T A C G T C G A T C G T A G A C T T C A G C T G A A T C G
Reverse Opposite:
A T G C G A C T A G T C C T G A A C G T G C T A G T C A G T C A G T C A A G T C
p-value:1e-12
log p-value:-2.810e+01
Information Content per bp:1.701
Number of Target Sequences with motif53.0
Percentage of Target Sequences with motif7.71%
Number of Background Sequences with motif1136.9
Percentage of Background Sequences with motif2.45%
Average Position of motif in Targets50.6 +/- 26.0bp
Average Position of motif in Background51.8 +/- 29.3bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:1
Score:0.89
Offset:1
Orientation:reverse strand
Alignment:GTTTTATGAG-
-TTTTATTRGN
 T C A G C A G T C A G T A C G T C G A T C G T A G A C T T C A G C T G A A T C G A C G T
A C G T C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:2
Score:0.89
Offset:1
Orientation:forward strand
Alignment:GTTTTATGAG-
-TTTTATKRGG
 T C A G C A G T C A G T A C G T C G A T C G T A G A C T T C A G C T G A A T C G A C G T
A C G T C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G

HOXD13/MA0909.1/Jaspar

Match Rank:3
Score:0.87
Offset:0
Orientation:reverse strand
Alignment:GTTTTATGAG
NTTTTATTGG
 T C A G C A G T C A G T A C G T C G A T C G T A G A C T T C A G C T G A A T C G
C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G

PH0068.1_Hoxc13/Jaspar

Match Rank:4
Score:0.84
Offset:-2
Orientation:reverse strand
Alignment:--GTTTTATGAG----
NAATTTTACGAGNTNN
 A C G T A C G T T C A G C A G T C A G T A C G T C G A T C G T A G A C T T C A G C T G A A T C G A C G T A C G T A C G T A C G T
G C T A C T G A C G T A C G A T C G A T C G A T C G A T C T G A G A T C C T A G C T G A A T C G T G A C C G A T C G A T C G A T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:5
Score:0.84
Offset:-1
Orientation:reverse strand
Alignment:-GTTTTATGAG-
DGWTTTATGRCN
 A C G T T C A G C A G T C A G T A C G T C G A T C G T A G A C T T C A G C T G A A T C G A C G T
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

HOXB13/MA0901.1/Jaspar

Match Rank:6
Score:0.83
Offset:0
Orientation:reverse strand
Alignment:GTTTTATGAG
NTTTTATTGG
 T C A G C A G T C A G T A C G T C G A T C G T A G A C T T C A G C T G A A T C G
C A T G C A G T C A G T C G A T G C A T C T G A G C A T C A G T C T A G A T C G

HOXC13/MA0907.1/Jaspar

Match Rank:7
Score:0.83
Offset:0
Orientation:reverse strand
Alignment:GTTTTATGAG-
NTTTTACGAGN
 T C A G C A G T C A G T A C G T C G A T C G T A G A C T T C A G C T G A A T C G A C G T
C G A T C G A T C G A T C G A T G C A T G T C A A G T C C T A G T C G A A T C G T G A C

HOXA13/MA0650.1/Jaspar

Match Rank:8
Score:0.83
Offset:0
Orientation:reverse strand
Alignment:GTTTTATGAG
TTTTTATTGG
 T C A G C A G T C A G T A C G T C G A T C G T A G A C T T C A G C T G A A T C G
C A G T A C G T A C G T C G A T C G A T C G T A C G A T C A G T T C A G A T C G

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:9
Score:0.82
Offset:0
Orientation:reverse strand
Alignment:GTTTTATGAG
NTTTTATGAC
 T C A G C A G T C A G T A C G T C G A T C G T A G A C T T C A G C T G A A T C G
C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C

CDX1/MA0878.1/Jaspar

Match Rank:10
Score:0.82
Offset:1
Orientation:reverse strand
Alignment:GTTTTATGAG
-TTTTATTGC
 T C A G C A G T C A G T A C G T C G A T C G T A G A C T T C A G C T G A A T C G
A C G T C A G T C G A T G C A T C G A T C G T A A G C T C A G T C T A G A G T C