Information for 20-CASCCWSCTSTCC (Motif 40)

A G T C C G T A A T G C A G T C A G T C C G A T A T C G A G T C A C G T A T C G A C G T A G T C A G T C
Reverse Opposite:
A C T G A C T G C G T A A T G C C G T A A C T G A T G C C G T A A C T G A C T G A T C G A C G T A C T G
p-value:1e-6
log p-value:-1.444e+01
Information Content per bp:1.884
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.44%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets52.8 +/- 27.3bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0047.1_Myf6_1/Jaspar

Match Rank:1
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CASCCWSCTSTCC---
CNGACACCTGTTCNNN
 A G T C C G T A A T G C A G T C A G T C C G A T A T C G A G T C A C G T A T C G A C G T A G T C A G T C A C G T A C G T A C G T
T G A C C T A G T C A G T G C A A G T C C T G A T G A C A T G C C G A T C T A G A G C T A G C T T A G C G A C T A G C T A G T C

Myod1/MA0499.1/Jaspar

Match Rank:2
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CASCCWSCTSTCC--
--TGCAGCTGTCCCT
 A G T C C G T A A T G C A G T C A G T C C G A T A T C G A G T C A C G T A T C G A C G T A G T C A G T C A C G T A C G T
A C G T A C G T G C A T T A C G A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G T C T A G C A G T C A G C T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CASCCWSCTSTCC
CCCCCTGCTGTG-
 A G T C C G T A A T G C A G T C A G T C C G A T A T C G A G T C A C G T A T C G A C G T A G T C A G T C
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T

Myog/MA0500.1/Jaspar

Match Rank:4
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CASCCWSCTSTCC
-NNGCAGCTGTC-
 A G T C C G T A A T G C A G T C A G T C C G A T A T C G A G T C A C G T A T C G A C G T A G T C A G T C
A C G T A T G C G A C T A T C G A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G T C A C G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:5
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CASCCWSCTSTCC
--GCCATCTGTT-
 A G T C C G T A A T G C A G T C A G T C C G A T A T C G A G T C A C G T A T C G A C G T A G T C A G T C
A C G T A C G T T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T A C G T

Tcf12/MA0521.1/Jaspar

Match Rank:6
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CASCCWSCTSTCC
-NNGCAGCTGTT-
 A G T C C G T A A T G C A G T C A G T C C G A T A T C G A G T C A C G T A T C G A C G T A G T C A G T C
A C G T A T G C G C A T A T C G A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G C T A C G T

MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer

Match Rank:7
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:CASCCWSCTSTCC
----CAGCTGTT-
 A G T C C G T A A T G C A G T C A G T C C G A T A T C G A G T C A C G T A T C G A C G T A G T C A G T C
A C G T A C G T A C G T A C G T A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G C T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:8
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CASCCWSCTSTCC
GGCCYCCTGCTGDGH
 A C G T A C G T A G T C C G T A A T G C A G T C A G T C C G A T A T C G A G T C A C G T A T C G A C G T A G T C A G T C
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer

Match Rank:9
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:CASCCWSCTSTCC
---CCAGCTGTTN
 A G T C C G T A A T G C A G T C A G T C C G A T A T C G A G T C A C G T A T C G A C G T A G T C A G T C
A C G T A C G T A C G T T G A C G T A C C T G A A C T G T G A C G C A T C A T G A C G T A C G T G C T A

HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer

Match Rank:10
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CASCCWSCTSTCC
-NNVCAGCTGB--
 A G T C C G T A A T G C A G T C A G T C C G A T A T C G A G T C A C G T A T C G A C G T A G T C A G T C
A C G T C A T G T C A G T G A C G T A C G T C A T A C G T A G C G C A T T A C G A C T G A C G T A C G T