Information for 3-CAAGGTGCAC (Motif 4)

G T A C C G T A T G C A A C T G A C T G A C G T T C A G T G A C C G T A A G T C
Reverse Opposite:
A C T G A C G T A C T G A G T C C G T A A G T C G T A C A C G T C G A T A C T G
p-value:1e-15
log p-value:-3.670e+01
Information Content per bp:1.784
Number of Target Sequences with motif62.0
Percentage of Target Sequences with motif9.02%
Number of Background Sequences with motif1216.1
Percentage of Background Sequences with motif2.63%
Average Position of motif in Targets50.8 +/- 26.1bp
Average Position of motif in Background52.2 +/- 36.5bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0026.1_Gm397_1/Jaspar

Match Rank:1
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CAAGGTGCAC------
CAGATGTGCACATACGT
 A C G T G T A C C G T A T G C A A C T G A C T G A C G T T C A G T G A C C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T
G T A C G C T A C A T G C G T A C G A T T A C G A G C T C T A G A G T C C T G A A T G C G C T A A G C T G T C A G T A C C A T G G A C T

PB0104.1_Zscan4_1/Jaspar

Match Rank:2
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-CAAGGTGCAC------
TACATGTGCACATAAAA
 A C G T G T A C C G T A T G C A A C T G A C T G A C G T T C A G T G A C C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T
C A G T G T C A T G A C C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A A G C T G C T A G C T A C G T A G T C A

Foxa2/MA0047.2/Jaspar

Match Rank:3
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CAAGGTGCAC-
NCTAAGTAAACA
 A C G T G T A C C G T A T G C A A C T G A C T G A C G T T C A G T G A C C G T A A G T C A C G T
T A G C G T A C G C A T T C G A C G T A C T A G A G C T G T C A T G C A C G T A A G T C C G T A

FOXA1/MA0148.3/Jaspar

Match Rank:4
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CAAGGTGCAC-----
CAAAGTAAACANNNN
 G T A C C G T A T G C A A C T G A C T G A C G T T C A G T G A C C G T A A G T C A C G T A C G T A C G T A C G T A C G T
G T A C G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C G C T A C G A T T A C G T C A G C T G A

FOXF2/MA0030.1/Jaspar

Match Rank:5
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CAAGGTGCAC---
CAAACGTAAACAAT
 A C G T G T A C C G T A T G C A A C T G A C T G A C G T T C A G T G A C C G T A A G T C A C G T A C G T A C G T
A G T C G T C A G C T A C G T A T A G C C T A G A C G T C G T A C G T A C G T A A G T C C G T A G C T A C G A T

Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer

Match Rank:6
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CAAGGTGCAC----
NCWRWGTAAACANSV
 A C G T G T A C C G T A T G C A A C T G A C T G A C G T T C A G T G A C C G T A A G T C A C G T A C G T A C G T A C G T
T G A C G A T C G C A T C T G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C G T A A T C G T C A G

Esrrg/MA0643.1/Jaspar

Match Rank:7
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CAAGGTGCAC
TCAAGGTCAT-
 A C G T G T A C C G T A T G C A A C T G A C T G A C G T T C A G T G A C C G T A A G T C
G A C T T A G C C T G A T C G A C A T G A T C G C A G T A G T C C T G A G C A T A C G T

PB0014.1_Esrra_1/Jaspar

Match Rank:8
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----CAAGGTGCAC---
TATTCAAGGTCATGCGA
 A C G T A C G T A C G T A C G T G T A C C G T A T G C A A C T G A C T G A C G T T C A G T G A C C G T A A G T C A C G T A C G T A C G T
C A G T G T C A A C G T A G C T T A G C C T G A C T G A C A T G C A T G C A G T A G T C C T G A G C A T T C A G A G T C A C T G G T C A

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CAAGGTGCAC
TCAAGGTCAN-
 A C G T G T A C C G T A T G C A A C T G A C T G A C G T T C A G T G A C C G T A A G T C
A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C A C G T

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:10
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CAAGGTGCAC---
-TATGTAAACANG
 G T A C C G T A T G C A A C T G A C T G A C G T T C A G T G A C C G T A A G T C A C G T A C G T A C G T
A C G T G C A T T C G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C T G A T A C G