Information for 19-CAGTGTGTCTGTC (Motif 37)

A G T C C G T A A T C G A C G T C T A G C G A T A C T G A C G T A G T C A C G T A T C G A C G T A G T C
Reverse Opposite:
A C T G C G T A A T G C C G T A A C T G C G T A G T A C C G T A A G T C C G T A A T G C A C G T A C T G
p-value:1e-6
log p-value:-1.567e+01
Information Content per bp:1.887
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.58%
Number of Background Sequences with motif3.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets48.0 +/- 26.7bp
Average Position of motif in Background25.7 +/- 17.1bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.63
Offset:5
Orientation:reverse strand
Alignment:CAGTGTGTCTGTC----
-----TGTCTGDCACCT
 A G T C C G T A A T C G A C G T C T A G C G A T A C T G A C G T A G T C A C G T A T C G A C G T A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:2
Score:0.61
Offset:4
Orientation:forward strand
Alignment:CAGTGTGTCTGTC----
----CTGTCTGTCACCT
 A G T C C G T A A T C G A C G T C T A G C G A T A C T G A C G T A G T C A C G T A T C G A C G T A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

PB0151.1_Myf6_2/Jaspar

Match Rank:3
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CAGTGTGTCTGTC---
-GGNGCGNCTGTTNNN
 A G T C C G T A A T C G A C G T C T A G C G A T A C T G A C G T A G T C A C G T A T C G A C G T A G T C A C G T A C G T A C G T
A C G T C T A G A C T G G A C T A T C G A T G C A T C G A C T G G A T C A G C T C T A G A C G T A G C T A C T G A T G C A G C T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.58
Offset:2
Orientation:forward strand
Alignment:CAGTGTGTCTGTC
--VBSYGTCTGG-
 A G T C C G T A A T C G A C G T C T A G C G A T A C T G A C G T A G T C A C G T A T C G A C G T A G T C
A C G T A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.55
Offset:4
Orientation:forward strand
Alignment:CAGTGTGTCTGTC
----CTGTCTGG-
 A G T C C G T A A T C G A C G T C T A G C G A T A C T G A C G T A G T C A C G T A T C G A C G T A G T C
A C G T A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:6
Score:0.55
Offset:8
Orientation:reverse strand
Alignment:CAGTGTGTCTGTC--
--------NTGTCAN
 A G T C C G T A A T C G A C G T C T A G C G A T A C T G A C G T A G T C A C G T A T C G A C G T A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A T C G A C T C T A G A C G T A T G C C G T A C G T A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.55
Offset:4
Orientation:forward strand
Alignment:CAGTGTGTCTGTC
----TWGTCTGV-
 A G T C C G T A A T C G A C G T C T A G C G A T A C T G A C G T A G T C A C G T A T C G A C G T A G T C
A C G T A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:8
Score:0.54
Offset:7
Orientation:reverse strand
Alignment:CAGTGTGTCTGTC--
-------GCTGTCAA
 A G T C C G T A A T C G A C G T C T A G C G A T A C T G A C G T A G T C A C G T A T C G A C G T A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A

MEIS3/MA0775.1/Jaspar

Match Rank:9
Score:0.54
Offset:7
Orientation:reverse strand
Alignment:CAGTGTGTCTGTC--
-------CCTGTCAA
 A G T C C G T A A T C G A C G T C T A G C G A T A C T G A C G T A G T C A C G T A T C G A C G T A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:10
Score:0.52
Offset:-6
Orientation:forward strand
Alignment:------CAGTGTGTCTGTC
GTAGGTCACTGGGTCA---
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A T C G A C G T C T A G C G A T A C T G A C G T A G T C A C G T A T C G A C G T A G T C
A T C G A G C T C T G A C T A G A C T G A C G T G T A C G C T A A T G C A C G T C T A G C A T G T A C G C G A T A T G C C G T A A C G T A C G T A C G T