Information for 9-CTTGGCAAGA (Motif 22)

G A T C G A C T C G A T C A T G C T A G G A T C G T C A C T G A C T A G T G C A
Reverse Opposite:
A C G T G A T C G A C T C A G T C T A G G A T C G A T C G C T A C T G A C T A G
p-value:1e-9
log p-value:-2.168e+01
Information Content per bp:1.661
Number of Target Sequences with motif52.0
Percentage of Target Sequences with motif7.57%
Number of Background Sequences with motif1317.1
Percentage of Background Sequences with motif2.84%
Average Position of motif in Targets46.3 +/- 29.1bp
Average Position of motif in Background50.4 +/- 30.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.83
Offset:0
Orientation:reverse strand
Alignment:CTTGGCAAGA
CTTGGCAA--
 G A T C G A C T C G A T C A T G C T A G G A T C G T C A C T G A C T A G T G C A
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:2
Score:0.80
Offset:-1
Orientation:reverse strand
Alignment:-CTTGGCAAGA
NNTTGGCANN-
 A C G T G A T C G A C T C G A T C A T G C T A G G A T C G T C A C T G A C T A G T G C A
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:CTTGGCAAGA
NTTGGCANN-
 G A T C G A C T C G A T C A T G C T A G G A T C G T C A C T G A C T A G T G C A
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.74
Offset:1
Orientation:forward strand
Alignment:CTTGGCAAGA
-TTGGCA---
 G A T C G A C T C G A T C A T G C T A G G A T C G T C A C T G A C T A G T G C A
A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CTTGGCAAGA-
SCCTAGCAACAG
 A C G T G A T C G A C T C G A T C A T G C T A G G A T C G T C A C T G A C T A G T G C A A C G T
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CTTGGCAAGA
WDNCTGGGCA---
 A C G T A C G T A C G T G A T C G A C T C G A T C A T G C T A G G A T C G T C A C T G A C T A G T G C A
G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:7
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CTTGGCAAGA
GGTTGGCAT--
 A C G T G A T C G A C T C G A T C A T G C T A G G A T C G T C A C T G A C T A G T G C A
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T

Rfx1/MA0509.1/Jaspar

Match Rank:8
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----CTTGGCAAGA
GTTGCCATGGCAAC-
 A C G T A C G T A C G T A C G T A C G T G A T C G A C T C G A T C A T G C T A G G A T C G T C A C T G A C T A G T G C A
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C A C G T

PB0055.1_Rfx4_1/Jaspar

Match Rank:9
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CTTGGCAAGA--
TACCATAGCAACGGT
 A C G T A C G T A C G T G A T C G A C T C G A T C A T G C T A G G A T C G T C A C T G A C T A G T G C A A C G T A C G T
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:10
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CTTGGCAAGA
ARNTGACA---
 A C G T G A T C G A C T C G A T C A T G C T A G G A T C G T C A C T G A C T A G T G C A
T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A A C G T A C G T A C G T