Information for 5-TGCCAGGGABGCCGGC (Motif 5)

A C G T A C T G A G T C A T G C G C T A C T A G A C T G C T A G G T C A A C G T C T A G A G T C G T A C C A T G A C T G A G T C
Reverse Opposite:
A C T G A G T C G T A C C A T G A C T G A G T C T C G A A C G T A G T C A G T C G A T C C G A T A T C G A C T G A G T C C G T A
p-value:1e-11
log p-value:-2.740e+01
Information Content per bp:1.782
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.14%
Number of Background Sequences with motif12.4
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets43.9 +/- 21.9bp
Average Position of motif in Background54.3 +/- 28.9bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-TGCCAGGGABGCCGGC
TTGCCAAG---------
 A C G T A C G T A C T G A G T C A T G C G C T A C T A G A C T G C T A G G T C A A C G T C T A G A G T C G T A C C A T G A C T G A G T C
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Rfx1/MA0509.1/Jaspar

Match Rank:2
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--TGCCAGGGABGCCGGC
GTTGCCATGGNAAC----
 A C G T A C G T A C G T A C T G A G T C A T G C G C T A C T A G A C T G C T A G G T C A A C G T C T A G A G T C G T A C C A T G A C T G A G T C
A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C A C G T A C G T A C G T A C G T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TGCCAGGGABGCCGGC
TTGCCATGGCAACN---
 A C G T A C G T A C T G A G T C A T G C G C T A C T A G A C T G C T A G G T C A A C G T C T A G A G T C G T A C C A T G A C T G A G T C
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C A C G T A C G T A C G T

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:4
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--TGCCAGGGABGCCGGC
GTTGCCATGGCAACCG--
 A C G T A C G T A C G T A C T G A G T C A T G C G C T A C T A G A C T G C T A G G T C A A C G T C T A G A G T C G T A C C A T G A C T G A G T C
C T A G A G C T G A C T C T A G A G T C A G T C G T C A C G A T T C A G T C A G G A T C C T G A T C G A G A T C T A G C T C A G A C G T A C G T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:5
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-TGCCAGGGABGCCGGC
TTGCCATGGCAACC---
 A C G T A C G T A C T G A G T C A T G C G C T A C T A G A C T G C T A G G T C A A C G T C T A G A G T C G T A C C A T G A C T G A G T C
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:6
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--TGCCAGGGABGCCGGC
CGTGCCAAG---------
 A C G T A C G T A C G T A C T G A G T C A T G C G C T A C T A G A C T G C T A G G T C A A C G T C T A G A G T C G T A C C A T G A C T G A G T C
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:7
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--TGCCAGGGABGCCGGC
GGTGCCAAGT--------
 A C G T A C G T A C G T A C T G A G T C A T G C G C T A C T A G A C T G C T A G G T C A A C G T C T A G A G T C G T A C C A T G A C T G A G T C
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:8
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--TGCCAGGGABGCCGGC
GTTGCCATGGCAACM---
 A C G T A C G T A C G T A C T G A G T C A T G C G C T A C T A G A C T G C T A G G T C A A C G T C T A G A G T C G T A C C A T G A C T G A G T C
C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C T G A C A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:9
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:TGCCAGGGABGCCGGC
TGCCAA----------
 A C G T A C T G A G T C A T G C G C T A C T A G A C T G C T A G G T C A A C G T C T A G A G T C G T A C C A T G A C T G A G T C
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer

Match Rank:10
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-TGCCAGGGABGCCGGC
TTTCCTGGAAAGNNN--
 A C G T A C G T A C T G A G T C A T G C G C T A C T A G A C T G C T A G G T C A A C G T C T A G A G T C G T A C C A T G A C T G A G T C
G A C T A G C T A G C T G A T C G A T C G C A T C T A G T C A G T C G A T C G A C T G A C T A G A G T C G C T A C T G A A C G T A C G T