Information for 12-GCTCAGCCTGAGA (Motif 21)

A C T G A G T C A C G T A G T C C G T A A C T G A G T C A G T C A C G T A C T G C T G A A C T G G T C A
Reverse Opposite:
A C G T A G T C A G C T A G T C C G T A C T A G A C T G A G T C A C G T A C T G C G T A C T A G A G T C
p-value:1e-6
log p-value:-1.516e+01
Information Content per bp:1.913
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.51%
Number of Background Sequences with motif3.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets50.6 +/- 26.1bp
Average Position of motif in Background36.6 +/- 3.8bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:1
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:GCTCAGCCTGAGA
DCTCAGCAGG---
 A C T G A G T C A C G T A G T C C G T A A C T G A G T C A G T C A C G T A C T G C T G A A C T G G T C A
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:2
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GCTCAGCCTGAGA
CCACACAGCAGGAGA
 A C G T A C G T A C T G A G T C A C G T A G T C C G T A A C T G A G T C A G T C A C G T A C T G C T G A A C T G G T C A
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0207.1_Zic3_2/Jaspar

Match Rank:3
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GCTCAGCCTGAGA
GAGCACAGCAGGACA
 A C G T A C G T A C T G A G T C A C G T A G T C C G T A A C T G A G T C A G T C A C G T A C T G C T G A A C T G G T C A
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

PB0205.1_Zic1_2/Jaspar

Match Rank:4
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GCTCAGCCTGAGA
CCACACAGCAGGAGA
 A C G T A C G T A C T G A G T C A C G T A G T C C G T A A C T G A G T C A G T C A C G T A C T G C T G A A C T G G T C A
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:5
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GCTCAGCCTGAGA--
DCHCAGCAGGRGGCC
 A C T G A G T C A C G T A G T C C G T A A C T G A G T C A G T C A C G T A C T G C T G A A C T G G T C A A C G T A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GCTCAGCCTGAGA
GCTCGGSCTC---
 A C T G A G T C A C G T A G T C C G T A A C T G A G T C A G T C A C G T A C T G C T G A A C T G G T C A
C T A G G T A C A C G T A T G C C T A G A C T G T A C G A G T C A C G T A G T C A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GCTCAGCCTGAGA
-CACAGCAGGGGG
 A C T G A G T C A C G T A G T C C G T A A C T G A G T C A G T C A C G T A C T G C T G A A C T G G T C A
A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.57
Offset:-9
Orientation:forward strand
Alignment:---------GCTCAGCCTGAGA
GAGCCTGGTACTGWGCCTGR--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A G T C C G T A A C T G A G T C A G T C A C G T A C T G C T G A A C T G G T C A
T A C G C T G A C A T G G A T C G T A C G C A T T C A G T A C G A G C T G T C A G A T C G C A T T A C G C G T A C T A G G A T C G A T C C G A T A C T G T C A G A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:9
Score:0.55
Offset:3
Orientation:forward strand
Alignment:GCTCAGCCTGAGA
---CAGCC-----
 A C T G A G T C A C G T A G T C C G T A A C T G A G T C A G T C A C G T A C T G C T G A A C T G G T C A
A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GCTCAGCCTGAGA
NAGGTCACNNTGACC
 A C G T A C G T A C T G A G T C A C G T A G T C C G T A A C T G A G T C A G T C A C G T A C T G C T G A A C T G G T C A
T G C A C T G A C A T G C T A G C A G T A G T C C G T A A T G C A T G C T A C G G C A T T C A G G T C A G A T C G T A C