Information for 3-SCCHATAAAA (Motif 3)

T A G C G T A C G A T C G A C T C T G A A C G T C G T A C G T A C T G A T G C A
Reverse Opposite:
A C G T A G C T A C G T G C A T C G T A G A C T C T G A C T A G C A T G A T C G
p-value:1e-30
log p-value:-6.924e+01
Information Content per bp:1.672
Number of Target Sequences with motif93.0
Percentage of Target Sequences with motif12.03%
Number of Background Sequences with motif1279.8
Percentage of Background Sequences with motif2.85%
Average Position of motif in Targets49.3 +/- 26.3bp
Average Position of motif in Background48.7 +/- 30.9bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:1
Score:0.94
Offset:0
Orientation:reverse strand
Alignment:SCCHATAAAA
CCYMATAAAA
 T A G C G T A C G A T C G A C T C T G A A C G T C G T A C G T A C T G A T G C A
T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A

HOXB13/MA0901.1/Jaspar

Match Rank:2
Score:0.94
Offset:1
Orientation:forward strand
Alignment:SCCHATAAAA-
-CCAATAAAAC
 T A G C G T A C G A T C G A C T C T G A A C G T C G T A C G T A C T G A T G C A A C G T
A C G T T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:3
Score:0.93
Offset:0
Orientation:forward strand
Alignment:SCCHATAAAA
NCYAATAAAA
 T A G C G T A C G A T C G A C T C T G A A C G T C G T A C G T A C T G A T G C A
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A

HOXD13/MA0909.1/Jaspar

Match Rank:4
Score:0.92
Offset:1
Orientation:forward strand
Alignment:SCCHATAAAA-
-CCAATAAAAA
 T A G C G T A C G A T C G A C T C T G A A C G T C G T A C G T A C T G A T G C A A C G T
A C G T A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A

HOXA13/MA0650.1/Jaspar

Match Rank:5
Score:0.92
Offset:1
Orientation:forward strand
Alignment:SCCHATAAAA-
-CCAATAAAAA
 T A G C G T A C G A T C G A C T C T G A A C G T C G T A C G T A C T G A T G C A A C G T
A C G T T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:6
Score:0.91
Offset:0
Orientation:forward strand
Alignment:SCCHATAAAA
NGCAATTAAA
 T A G C G T A C G A T C G A C T C T G A A C G T C G T A C G T A C T G A T G C A
T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A

PH0057.1_Hoxb13/Jaspar

Match Rank:7
Score:0.90
Offset:-2
Orientation:forward strand
Alignment:--SCCHATAAAA----
AACCCAATAAAATTCG
 A C G T A C G T T A G C G T A C G A T C G A C T C T G A A C G T C G T A C G T A C T G A T G C A A C G T A C G T A C G T A C G T
T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G

PH0078.1_Hoxd13/Jaspar

Match Rank:8
Score:0.90
Offset:-2
Orientation:forward strand
Alignment:--SCCHATAAAA----
CTACCAATAAAATTCT
 A C G T A C G T T A G C G T A C G A T C G A C T C T G A A C G T C G T A C G T A C T G A T G C A A C G T A C G T A C G T A C G T
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:9
Score:0.86
Offset:0
Orientation:forward strand
Alignment:SCCHATAAAA--
NGYCATAAAWCH
 T A G C G T A C G A T C G A C T C T G A A C G T C G T A C G T A C T G A T G C A A C G T A C G T
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

CDX1/MA0878.1/Jaspar

Match Rank:10
Score:0.85
Offset:1
Orientation:forward strand
Alignment:SCCHATAAAA
-GCAATAAAA
 T A G C G T A C G A T C G A C T C T G A A C G T C G T A C G T A C T G A T G C A
A C G T T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A