Information for 12-GCTAKCARRT (Motif 19)

T C A G G T A C G C A T C G T A C A T G A T G C C G T A T C A G T C A G C G A T
Reverse Opposite:
G C T A A G T C A G T C C G A T T A C G G T A C G C A T C G T A C A T G A G T C
p-value:1e-7
log p-value:-1.733e+01
Information Content per bp:1.474
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.55%
Number of Background Sequences with motif81.9
Percentage of Background Sequences with motif0.18%
Average Position of motif in Targets46.7 +/- 29.7bp
Average Position of motif in Background48.5 +/- 27.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Dux/MA0611.1/Jaspar

Match Rank:1
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GCTAKCARRT
CCAATCAA--
 T C A G G T A C G C A T C G T A C A T G A T G C C G T A T C A G T C A G C G A T
A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A A C G T A C G T

PB0105.1_Arid3a_2/Jaspar

Match Rank:2
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---GCTAKCARRT--
ACCCGTATCAAATTT
 A C G T A C G T A C G T T C A G G T A C G C A T C G T A C A T G A T G C C G T A T C A G T C A G C G A T A C G T A C G T
G T C A G T A C T G A C T A G C T C A G A G C T T C G A A G C T T A G C C T G A C G T A T C G A C G A T G A C T C A G T

SNAI2/MA0745.1/Jaspar

Match Rank:3
Score:0.60
Offset:3
Orientation:forward strand
Alignment:GCTAKCARRT--
---AACAGGTGT
 T C A G G T A C G C A T C G T A C A T G A T G C C G T A T C A G T C A G C G A T A C G T A C G T
A C G T A C G T A C G T C T G A C T G A G T A C G C T A C T A G C T A G G A C T C A T G A G C T

PH0166.1_Six6_2/Jaspar

Match Rank:4
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----GCTAKCARRT--
AATAGGGTATCAATATT
 A C G T A C G T A C G T A C G T A C G T T C A G G T A C G C A T C G T A C A T G A T G C C G T A T C A G T C A G C G A T A C G T A C G T
C T G A C G T A C G A T T C G A C T A G C A T G T C A G C A G T C T G A A C G T G A T C G C T A G C T A G A C T G C T A G A C T A C G T

POL002.1_INR/Jaspar

Match Rank:5
Score:0.59
Offset:4
Orientation:forward strand
Alignment:GCTAKCARRT--
----TCAGTCTT
 T C A G G T A C G C A T C G T A C A T G A T G C C G T A T C A G T C A G C G A T A C G T A C G T
A C G T A C G T A C G T A C G T C A G T A G T C C G T A A T C G G A C T G A T C A G C T A G C T

MEIS2/MA0774.1/Jaspar

Match Rank:6
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GCTAKCARRT
GCTGTCAA--
 T C A G G T A C G C A T C G T A C A T G A T G C C G T A T C A G T C A G C G A T
A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T A C G T

NRL/MA0842.1/Jaspar

Match Rank:7
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GCTAKCARRT-
GTCAGCANNTN
 T C A G G T A C G C A T C G T A C A T G A T G C C G T A T C A G T C A G C G A T A C G T
T C A G C G A T G T A C C G T A C A T G A G T C C T G A C G T A C G T A G C A T G C A T

PB0041.1_Mafb_1/Jaspar

Match Rank:8
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----GCTAKCARRT--
NCTANGTCAGCAAATTT
 A C G T A C G T A C G T A C G T A C G T T C A G G T A C G C A T C G T A C A T G A T G C C G T A T C A G T C A G C G A T A C G T A C G T
C A G T G A T C A G C T C G T A G C T A T C A G A C G T G T A C C G T A C A T G G A T C C G T A G T C A C G T A G C A T G A C T C G A T

PB0059.1_Six6_1/Jaspar

Match Rank:9
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----GCTAKCARRT--
AATAGGGTATCATATAT
 A C G T A C G T A C G T A C G T A C G T T C A G G T A C G C A T C G T A C A T G A T G C C G T A T C A G T C A G C G A T A C G T A C G T
C T G A G C T A C G A T T C G A C T A G A C T G T C A G A C G T C T G A A C G T G A T C C T G A G A C T C G T A C G A T G C T A G A C T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GCTAKCARRT-
SCCTAGCAACAG
 A C G T T C A G G T A C G C A T C G T A C A T G A T G C C G T A T C A G T C A G C G A T A C G T
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G