Information for 13-GTAATTTAATGAC (Motif 14)

A C T G C G A T C G T A C G T A A C G T A C G T A C G T C G T A C T G A C G A T A C T G C G T A A G T C
Reverse Opposite:
A C T G A C G T A G T C C G T A A G C T C G A T C G T A C G T A C G T A A C G T A C G T C G T A A G T C
p-value:1e-10
log p-value:-2.512e+01
Information Content per bp:1.939
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.65%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets66.0 +/- 13.7bp
Average Position of motif in Background78.1 +/- 1.6bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0073.1_Hoxc9/Jaspar

Match Rank:1
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:GTAATTTAATGAC----
-NNAATTAATGACCNNN
 A C T G C G A T C G T A C G T A A C G T A C G T A C G T C G T A C T G A C G A T A C T G C G T A A G T C A C G T A C G T A C G T A C G T
A C G T T G C A G C A T C T G A C T G A C G A T A C G T C G T A C G T A A G C T A C T G C T G A A G T C G A T C A G C T G T A C A G T C

PROP1/MA0715.1/Jaspar

Match Rank:2
Score:0.74
Offset:1
Orientation:forward strand
Alignment:GTAATTTAATGAC
-TAATTTAATTA-
 A C T G C G A T C G T A C G T A A C G T A C G T A C G T C G T A C T G A C G A T A C T G C G T A A G T C
A C G T G C A T C G T A C T G A G C A T G A C T C G A T G T C A C T G A C G A T G A C T C G T A A C G T

PH0012.1_Cdx1/Jaspar

Match Rank:3
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:GTAATTTAATGAC----
-NAATTTTATTACCTNN
 A C T G C G A T C G T A C G T A A C G T A C G T A C G T C G T A C T G A C G A T A C T G C G T A A G T C A C G T A C G T A C G T A C G T
A C G T C G A T G T C A T C G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T G A C T G C T A

PH0056.1_Hoxa9/Jaspar

Match Rank:4
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-GTAATTTAATGAC---
ANTAATTTTATGGCCGN
 A C G T A C T G C G A T C G T A C G T A A C G T A C G T A C G T C G T A C T G A C G A T A C T G C G T A A G T C A C G T A C G T A C G T
G C T A G A C T G C A T G C T A C G T A G C A T C G A T C G A T C G A T C G T A G A C T C A T G C T A G T A G C G A T C A C T G G A C T

PHOX2A/MA0713.1/Jaspar

Match Rank:5
Score:0.71
Offset:1
Orientation:forward strand
Alignment:GTAATTTAATGAC
-TAATTTAATTA-
 A C T G C G A T C G T A C G T A A C G T A C G T A C G T C G T A C T G A C G A T A C T G C G T A A G T C
A C G T G C A T C T G A C T G A G A C T A G C T G A C T T C G A T C G A A G C T G C A T C G T A A C G T

HOXC10/MA0905.1/Jaspar

Match Rank:6
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:GTAATTTAATGAC
---NTTTTACGAC
 A C T G C G A T C G T A C G T A A C G T A C G T A C G T C G T A C T G A C G A T A C T G C G T A A G T C
A C G T A C G T A C G T C G T A C G A T G C A T G C A T C G A T C G T A G A T C C A T G C T G A A G T C

Phox2b/MA0681.1/Jaspar

Match Rank:7
Score:0.70
Offset:1
Orientation:forward strand
Alignment:GTAATTTAATGAC
-TAATTTAATTA-
 A C T G C G A T C G T A C G T A A C G T A C G T A C G T C G T A C T G A C G A T A C T G C G T A A G T C
A C G T G C A T C T G A T C G A G A C T A G C T G A C T T C G A T C G A A G C T G C A T C G T A A C G T

Hoxa11/MA0911.1/Jaspar

Match Rank:8
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:GTAATTTAATGAC-
--ANTTTTACGACC
 A C T G C G A T C G T A C G T A A C G T A C G T A C G T C G T A C T G A C G A T A C T G C G T A A G T C A C G T
A C G T A C G T G C T A C G T A C G A T C G A T G C A T G C A T G C T A G A T C C T A G T C G A A G T C G A T C

DUX4/MA0468.1/Jaspar

Match Rank:9
Score:0.68
Offset:1
Orientation:forward strand
Alignment:GTAATTTAATGAC
-TAATTTAATCA-
 A C T G C G A T C G T A C G T A A C G T A C G T A C G T C G T A C T G A C G A T A C T G C G T A A G T C
A C G T G C A T C T G A C G T A G A C T A G C T A G C T G T C A C G T A A C G T A G T C C G T A A C G T

DUXA/MA0884.1/Jaspar

Match Rank:10
Score:0.66
Offset:0
Orientation:forward strand
Alignment:GTAATTTAATGAC
CTAATTTAATCAA
 A C T G C G A T C G T A C G T A A C G T A C G T A C G T C G T A C T G A C G A T A C T G C G T A A G T C
G A T C G A C T C T G A T C G A G A C T A G C T A G C T T G C A C T G A A C G T A G T C C G T A C T G A