Information for 5-TTTACTAGGC (Motif 5)

A C G T C G A T A C G T C G T A G A T C C G A T C G T A A C T G A C T G A T G C
Reverse Opposite:
A T C G G T A C A G T C C G A T G C T A C T A G A C G T G T C A C G T A C G T A
p-value:1e-15
log p-value:-3.512e+01
Information Content per bp:1.847
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif2.58%
Number of Background Sequences with motif93.5
Percentage of Background Sequences with motif0.20%
Average Position of motif in Targets53.6 +/- 25.8bp
Average Position of motif in Background47.8 +/- 30.0bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXC13/MA0907.1/Jaspar

Match Rank:1
Score:0.75
Offset:-2
Orientation:reverse strand
Alignment:--TTTACTAGGC
NTTTTACGAGN-
 A C G T A C G T A C G T C G A T A C G T C G T A G A T C C G A T C G T A A C T G A C T G A T G C
C G A T C G A T C G A T C G A T G C A T G T C A A G T C C T A G T C G A A T C G T G A C A C G T

PH0048.1_Hoxa13/Jaspar

Match Rank:2
Score:0.73
Offset:-4
Orientation:reverse strand
Alignment:----TTTACTAGGC--
ANATTTTACGAGNNNN
 A C G T A C G T A C G T A C G T A C G T C G A T A C G T C G T A G A T C C G A T C G T A A C T G A C T G A T G C A C G T A C G T
G C T A T C G A C G T A C G A T C A G T C G A T C G A T C T G A A G T C C T A G C T G A A T C G T A C G C G A T G C A T C G A T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:3
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-TTTACTAGGC
TTTTATKRGG-
 A C G T A C G T C G A T A C G T C G T A G A T C C G A T C G T A A C T G A C T G A T G C
C G A T A C G T A C G T A C G T C G T A A G C T C A G T C T A G A T C G A C T G A C G T

PH0068.1_Hoxc13/Jaspar

Match Rank:4
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----TTTACTAGGC--
NAATTTTACGAGNTNN
 A C G T A C G T A C G T A C G T A C G T C G A T A C G T C G T A G A T C C G A T C G T A A C T G A C T G A T G C A C G T A C G T
G C T A C T G A C G T A C G A T C G A T C G A T C G A T C T G A G A T C C T A G C T G A A T C G T G A C C G A T C G A T C G A T

HMBOX1/MA0895.1/Jaspar

Match Rank:5
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-TTTACTAGGC
GTTAACTAGN-
 A C G T A C G T C G A T A C G T C G T A G A T C C G A T C G T A A C T G A C T G A T G C
A T C G C A G T G C A T C G T A G C T A T A G C G A C T G C T A T C A G A C G T A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:6
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-TTTACTAGGC
TTTTATTRGN-
 A C G T A C G T C G A T A C G T C G T A G A T C C G A T C G T A A C T G A C T G A T G C
C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A A C G T

PH0040.1_Hmbox1/Jaspar

Match Rank:7
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----TTTACTAGGC---
GANGTTAACTAGTTTNN
 A C G T A C G T A C G T A C G T A C G T C G A T A C G T C G T A G A T C C G A T C G T A A C T G A C T G A T G C A C G T A C G T A C G T
T A C G G C T A G C A T T C A G G C A T G C A T C G T A G T C A A G T C A G C T G T C A T C A G G C A T G A C T G A C T C G A T A G T C

HOXA13/MA0650.1/Jaspar

Match Rank:8
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--TTTACTAGGC
TTTTTATTGG--
 A C G T A C G T A C G T C G A T A C G T C G T A G A T C C G A T C G T A A C T G A C T G A T G C
C A G T A C G T A C G T C G A T C G A T C G T A C G A T C A G T T C A G A T C G A C G T A C G T

PH0168.1_Hnf1b/Jaspar

Match Rank:9
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----TTTACTAGGC--
AGCTGTTAACTAGCCGT
 A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C G T C G T A G A T C C G A T C G T A A C T G A C T G A T G C A C G T A C G T
C G T A A C T G A G T C A C G T C T A G G C A T G A C T C G T A G C T A A G T C A G C T C G T A T C A G A G T C G A T C A T C G A G C T

HOXD13/MA0909.1/Jaspar

Match Rank:10
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--TTTACTAGGC
NTTTTATTGG--
 A C G T A C G T A C G T C G A T A C G T C G T A G A T C C G A T C G T A A C T G A C T G A T G C
C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G A C G T A C G T