Information for 3-GCCAATAAAA (Motif 3)

C A T G G A T C G T A C G T C A C G T A A G C T G T C A C G T A C G T A G C T A
Reverse Opposite:
C G A T C G A T A C G T C A G T C T G A C G A T C A G T C A T G C T A G G A T C
p-value:1e-30
log p-value:-6.953e+01
Information Content per bp:1.721
Number of Target Sequences with motif92.0
Percentage of Target Sequences with motif11.87%
Number of Background Sequences with motif1281.2
Percentage of Background Sequences with motif2.77%
Average Position of motif in Targets46.3 +/- 24.2bp
Average Position of motif in Background50.3 +/- 29.5bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXB13/MA0901.1/Jaspar

Match Rank:1
Score:0.95
Offset:1
Orientation:forward strand
Alignment:GCCAATAAAA-
-CCAATAAAAC
 C A T G G A T C G T A C G T C A C G T A A G C T G T C A C G T A C G T A G C T A A C G T
A C G T T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C

HOXD13/MA0909.1/Jaspar

Match Rank:2
Score:0.93
Offset:1
Orientation:forward strand
Alignment:GCCAATAAAA-
-CCAATAAAAA
 C A T G G A T C G T A C G T C A C G T A A G C T G T C A C G T A C G T A G C T A A C G T
A C G T A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A

HOXA13/MA0650.1/Jaspar

Match Rank:3
Score:0.93
Offset:1
Orientation:forward strand
Alignment:GCCAATAAAA-
-CCAATAAAAA
 C A T G G A T C G T A C G T C A C G T A A G C T G T C A C G T A C G T A G C T A A C G T
A C G T T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A

PH0078.1_Hoxd13/Jaspar

Match Rank:4
Score:0.93
Offset:-2
Orientation:forward strand
Alignment:--GCCAATAAAA----
CTACCAATAAAATTCT
 A C G T A C G T C A T G G A T C G T A C G T C A C G T A A G C T G T C A C G T A C G T A G C T A A C G T A C G T A C G T A C G T
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

PH0057.1_Hoxb13/Jaspar

Match Rank:5
Score:0.92
Offset:-2
Orientation:forward strand
Alignment:--GCCAATAAAA----
AACCCAATAAAATTCG
 A C G T A C G T C A T G G A T C G T A C G T C A C G T A A G C T G T C A C G T A C G T A G C T A A C G T A C G T A C G T A C G T
T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:6
Score:0.92
Offset:0
Orientation:forward strand
Alignment:GCCAATAAAA
NCYAATAAAA
 C A T G G A T C G T A C G T C A C G T A A G C T G T C A C G T A C G T A G C T A
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:7
Score:0.89
Offset:0
Orientation:reverse strand
Alignment:GCCAATAAAA
CCYMATAAAA
 C A T G G A T C G T A C G T C A C G T A A G C T G T C A C G T A C G T A G C T A
T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A

PH0075.1_Hoxd10/Jaspar

Match Rank:8
Score:0.87
Offset:-2
Orientation:forward strand
Alignment:--GCCAATAAAA-----
AATGCAATAAAATTTAT
 A C G T A C G T C A T G G A T C G T A C G T C A C G T A A G C T G T C A C G T A C G T A G C T A A C G T A C G T A C G T A C G T A C G T
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:9
Score:0.85
Offset:0
Orientation:forward strand
Alignment:GCCAATAAAA
NGCAATTAAA
 C A T G G A T C G T A C G T C A C G T A A G C T G T C A C G T A C G T A G C T A
T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A

CDX1/MA0878.1/Jaspar

Match Rank:10
Score:0.85
Offset:1
Orientation:forward strand
Alignment:GCCAATAAAA
-GCAATAAAA
 C A T G G A T C G T A C G T C A C G T A A G C T G T C A C G T A C G T A G C T A
A C G T T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A