Information for 11-TTGCCAAACAATG (Motif 17)

A G C T A C G T A T C G A T G C A G T C C G T A C T G A C G T A G T A C G T C A T C G A A C G T A C T G
Reverse Opposite:
A G T C C G T A A C G T A C G T A C T G A C G T A G C T A C G T C T A G A T C G A T G C C G T A C T G A
p-value:1e-8
log p-value:-2.048e+01
Information Content per bp:1.838
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.03%
Number of Background Sequences with motif18.4
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets54.6 +/- 27.3bp
Average Position of motif in Background45.6 +/- 25.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:1
Score:0.71
Offset:4
Orientation:reverse strand
Alignment:TTGCCAAACAATG-
----VRAACAATGG
 A G C T A C G T A T C G A T G C A G T C C G T A C T G A C G T A G T A C G T C A T C G A A C G T A C T G A C G T
A C G T A C G T A C G T A C G T T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:2
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-TTGCCAAACAATG-
ATTTGCATACAATGG
 A C G T A G C T A C G T A T C G A T G C A G T C C G T A C T G A C G T A G T A C G T C A T C G A A C G T A C T G A C G T
G T C A A G C T G A C T C G A T T C A G T G A C C G T A G A C T C G T A A T G C C G T A C G T A C G A T C T A G T C A G

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:3
Score:0.68
Offset:5
Orientation:forward strand
Alignment:TTGCCAAACAATG--
-----RAACAATGGN
 A G C T A C G T A T C G A T G C A G T C C G T A C T G A C G T A G T A C G T C A T C G A A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C

Sox6/MA0515.1/Jaspar

Match Rank:4
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:TTGCCAAACAATG-
----AAAACAATGG
 A G C T A C G T A T C G A T G C A G T C C G T A C T G A C G T A G T A C G T C A T C G A A C G T A C T G A C G T
A C G T A C G T A C G T A C G T T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.66
Offset:0
Orientation:forward strand
Alignment:TTGCCAAACAATG
TTGCCAAG-----
 A G C T A C G T A T C G A T G C A G T C C G T A C T G A C G T A G T A C G T C A T C G A A C G T A C T G
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T A C G T

Sox5/MA0087.1/Jaspar

Match Rank:6
Score:0.64
Offset:5
Orientation:reverse strand
Alignment:TTGCCAAACAATG
-----NAACAAT-
 A G C T A C G T A T C G A T G C A G T C C G T A C T G A C G T A G T A C G T C A T C G A A C G T A C T G
A C G T A C G T A C G T A C G T A C G T G C A T C G T A C T G A A G T C C G T A G T C A A C G T A C G T

SOX9/MA0077.1/Jaspar

Match Rank:7
Score:0.64
Offset:5
Orientation:reverse strand
Alignment:TTGCCAAACAATG-
-----GAACAATGG
 A G C T A C G T A T C G A T G C A G T C C G T A C T G A C G T A G T A C G T C A T C G A A C G T A C T G A C G T
A C G T A C G T A C G T A C G T A C G T C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G

PB0168.1_Sox14_2/Jaspar

Match Rank:8
Score:0.64
Offset:2
Orientation:forward strand
Alignment:TTGCCAAACAATG----
--CTCACACAATGGCGC
 A G C T A C G T A T C G A T G C A G T C C G T A C T G A C G T A G T A C G T C A T C G A A C G T A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:9
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:TTGCCAAACAATG-
----VRRACAAWGG
 A G C T A C G T A T C G A T G C A G T C C G T A C T G A C G T A G T A C G T C A T C G A A C G T A C T G A C G T
A C G T A C G T A C G T A C G T T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G

Sox17/MA0078.1/Jaspar

Match Rank:10
Score:0.63
Offset:6
Orientation:reverse strand
Alignment:TTGCCAAACAATG--
------GACAATGNN
 A G C T A C G T A T C G A T G C A G T C C G T A C T G A C G T A G T A C G T C A T C G A A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G