Information for 4-CCMATAAAAA (Motif 5)

G A T C G T A C G T A C C G T A A C G T G C T A C G T A C G T A G T C A C T G A
Reverse Opposite:
G A C T C A G T G C A T G C A T C G A T C G T A C G A T A C T G C A T G C T A G
p-value:1e-18
log p-value:-4.288e+01
Information Content per bp:1.671
Number of Target Sequences with motif92.0
Percentage of Target Sequences with motif12.17%
Number of Background Sequences with motif1888.0
Percentage of Background Sequences with motif4.21%
Average Position of motif in Targets42.8 +/- 25.5bp
Average Position of motif in Background50.6 +/- 30.3bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXB13/MA0901.1/Jaspar

Match Rank:1
Score:0.93
Offset:0
Orientation:forward strand
Alignment:CCMATAAAAA
CCAATAAAAC
 G A T C G T A C G T A C C G T A A C G T G C T A C G T A C G T A G T C A C T G A
T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C

HOXD13/MA0909.1/Jaspar

Match Rank:2
Score:0.92
Offset:0
Orientation:forward strand
Alignment:CCMATAAAAA
CCAATAAAAA
 G A T C G T A C G T A C C G T A A C G T G C T A C G T A C G T A G T C A C T G A
A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A

HOXA13/MA0650.1/Jaspar

Match Rank:3
Score:0.91
Offset:0
Orientation:forward strand
Alignment:CCMATAAAAA
CCAATAAAAA
 G A T C G T A C G T A C C G T A A C G T G C T A C G T A C G T A G T C A C T G A
T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:4
Score:0.90
Offset:-1
Orientation:reverse strand
Alignment:-CCMATAAAAA
CCYMATAAAA-
 A C G T G A T C G T A C G T A C C G T A A C G T G C T A C G T A C G T A G T C A C T G A
T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:5
Score:0.90
Offset:-1
Orientation:forward strand
Alignment:-CCMATAAAAA
NCYAATAAAA-
 A C G T G A T C G T A C G T A C C G T A A C G T G C T A C G T A C G T A G T C A C T G A
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T

PH0057.1_Hoxb13/Jaspar

Match Rank:6
Score:0.90
Offset:-3
Orientation:forward strand
Alignment:---CCMATAAAAA---
AACCCAATAAAATTCG
 A C G T A C G T A C G T G A T C G T A C G T A C C G T A A C G T G C T A C G T A C G T A G T C A C T G A A C G T A C G T A C G T
T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G

PH0078.1_Hoxd13/Jaspar

Match Rank:7
Score:0.88
Offset:-3
Orientation:forward strand
Alignment:---CCMATAAAAA---
CTACCAATAAAATTCT
 A C G T A C G T A C G T G A T C G T A C G T A C C G T A A C G T G C T A C G T A C G T A G T C A C T G A A C G T A C G T A C G T
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:8
Score:0.84
Offset:-1
Orientation:forward strand
Alignment:-CCMATAAAAA
NGCAATTAAA-
 A C G T G A T C G T A C G T A C C G T A A C G T G C T A C G T A C G T A G T C A C T G A
T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A A C G T

CDX1/MA0878.1/Jaspar

Match Rank:9
Score:0.83
Offset:0
Orientation:forward strand
Alignment:CCMATAAAAA
GCAATAAAA-
 G A T C G T A C G T A C C G T A A C G T G C T A C G T A C G T A G T C A C T G A
T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T

PH0064.1_Hoxb9/Jaspar

Match Rank:10
Score:0.81
Offset:-3
Orientation:forward strand
Alignment:---CCMATAAAAA---
AGAGCCATAAAATTCG
 A C G T A C G T A C G T G A T C G T A C G T A C C G T A A C G T G C T A C G T A C G T A G T C A C T G A A C G T A C G T A C G T
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G