Information for 12-CGAAGTTGGC (Motif 19)

A T G C T C A G C G T A C G T A A T C G C A G T A C G T C T A G A C T G A G T C
Reverse Opposite:
A C T G A G T C A G T C C G T A G T C A A T G C A C G T A C G T A G T C T A C G
p-value:1e-8
log p-value:-1.926e+01
Information Content per bp:1.859
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.32%
Number of Background Sequences with motif42.9
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets50.7 +/- 23.3bp
Average Position of motif in Background48.9 +/- 24.7bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1/MA0095.2/Jaspar

Match Rank:1
Score:0.69
Offset:1
Orientation:forward strand
Alignment:CGAAGTTGGC---
-CAAGATGGCGGC
 A T G C T C A G C G T A C G T A A T C G C A G T A C G T C T A G A C T G A G T C A C G T A C G T A C G T
A C G T T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.68
Offset:4
Orientation:reverse strand
Alignment:CGAAGTTGGC---
----NTTGGCANN
 A T G C T C A G C G T A C G T A A T C G C A G T A C G T C T A G A C T G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.68
Offset:5
Orientation:forward strand
Alignment:CGAAGTTGGC-
-----TTGGCA
 A T G C T C A G C G T A C G T A A T C G C A G T A C G T C T A G A C T G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A

YY1(Zf)/Promoter/Homer

Match Rank:4
Score:0.68
Offset:1
Orientation:forward strand
Alignment:CGAAGTTGGC---
-CAAGATGGCGGC
 A T G C T C A G C G T A C G T A A T C G C A G T A C G T C T A G A C T G A G T C A C G T A C G T A C G T
A C G T T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C

NFIA/MA0670.1/Jaspar

Match Rank:5
Score:0.66
Offset:3
Orientation:reverse strand
Alignment:CGAAGTTGGC---
---NNTTGGCANN
 A T G C T C A G C G T A C G T A A T C G C A G T A C G T C T A G A C T G A G T C A C G T A C G T A C G T
A C G T A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

Hic1/MA0739.1/Jaspar

Match Rank:6
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:CGAAGTTGGC--
---GGTTGGCAT
 A T G C T C A G C G T A C G T A A T C G C A G T A C G T C T A G A C T G A G T C A C G T A C G T
A C G T A C G T A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T

PB0161.1_Rxra_2/Jaspar

Match Rank:7
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---CGAAGTTGGC---
TCGCGAAGGTTGTACT
 A C G T A C G T A C G T A T G C T C A G C G T A C G T A A T C G C A G T A C G T C T A G A C T G A G T C A C G T A C G T A C G T
C A G T T G A C T C A G G T A C T C A G G C T A G C T A C T A G A C T G A C G T A G C T T C A G A G C T C G T A G T A C C A G T

PB0029.1_Hic1_1/Jaspar

Match Rank:8
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CGAAGTTGGC-----
NGTAGGTTGGCATNNN
 A C G T A T G C T C A G C G T A C G T A A T C G C A G T A C G T C T A G A C T G A G T C A C G T A C G T A C G T A C G T A C G T
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T

POL008.1_DCE_S_I/Jaspar

Match Rank:9
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CGAAGTTGGC
NGAAGC----
 A T G C T C A G C G T A C G T A A T C G C A G T A C G T C T A G A C T G A G T C
T A C G T A C G T G C A T C G A T A C G T G A C A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:CGAAGTTGGC--
----CTTGGCAA
 A T G C T C A G C G T A C G T A A T C G C A G T A C G T C T A G A C T G A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A