Information for 7-GCACAAGGAACAA (Motif 10)

C T A G A G T C G T C A A G T C C G T A C T G A A C T G A C T G G C T A C G T A A G T C C G T A C G T A
Reverse Opposite:
A C G T A C G T A C T G A C G T C A G T A G T C A G T C A G C T C G A T A C T G A C G T A C T G A G T C
p-value:1e-11
log p-value:-2.749e+01
Information Content per bp:1.880
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.93%
Number of Background Sequences with motif4.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets61.1 +/- 24.9bp
Average Position of motif in Background46.0 +/- 29.7bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.65
Offset:3
Orientation:forward strand
Alignment:GCACAAGGAACAA
---CCAGGAACAG
 C T A G A G T C G T C A A G T C C G T A C T G A A C T G A C T G G C T A C G T A A G T C C G T A C G T A
A C G T A C G T A C G T T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:2
Score:0.62
Offset:6
Orientation:reverse strand
Alignment:GCACAAGGAACAA---
------GGAACAAAGR
 C T A G A G T C G T C A A G T C C G T A C T G A A C T G A C T G G C T A C G T A A G T C C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:3
Score:0.62
Offset:6
Orientation:reverse strand
Alignment:GCACAAGGAACAA---
------RNAACAATGG
 C T A G A G T C G T C A A G T C C G T A C T G A A C T G A C T G G C T A C G T A A G T C C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G

PB0183.1_Sry_2/Jaspar

Match Rank:4
Score:0.61
Offset:2
Orientation:forward strand
Alignment:GCACAAGGAACAA------
--TCACGGAACAATAGGTG
 C T A G A G T C G T C A A G T C C G T A C T G A A C T G A C T G G C T A C G T A A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G A C T G A T C C G T A G T A C C A T G T C A G T G C A C G T A A G T C C T G A C G T A G C A T C T G A C T A G T C A G G A C T T A C G

PB0173.1_Sox21_2/Jaspar

Match Rank:5
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:GCACAAGGAACAA------
--NNNNNGAACAATTGANN
 C T A G A G T C G T C A A G T C C G T A C T G A A C T G A C T G G C T A C G T A A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A G C T G T C A C T A G G T A C A C T G T A C G T C G A C G T A A T G C C G T A T C G A G C A T C G A T T A C G T C G A A G C T A C G T

MTF1/MA0863.1/Jaspar

Match Rank:6
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---GCACAAGGAACAA
TTTGCACACGGCAC--
 A C G T A C G T A C G T C T A G A G T C G T C A A G T C C G T A C T G A A C T G A C T G G C T A C G T A A G T C C G T A C G T A
C A G T A C G T G A C T T C A G G T A C C G T A T A G C G T C A A G T C C A T G C A T G A G T C T G C A G A T C A C G T A C G T

PB0070.1_Sox30_1/Jaspar

Match Rank:7
Score:0.60
Offset:4
Orientation:forward strand
Alignment:GCACAAGGAACAA-------
----AATGAACAATGGAATT
 C T A G A G T C G T C A A G T C C G T A C T G A A C T G A C T G G C T A C G T A A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T G A G C A T C A G T A T C G T C G A C G T A A G T C G C T A C T G A C G A T C A T G T C A G G C T A G T C A G A C T G A C T

MF0011.1_HMG_class/Jaspar

Match Rank:8
Score:0.59
Offset:8
Orientation:reverse strand
Alignment:GCACAAGGAACAA-
--------AACAAT
 C T A G A G T C G T C A A G T C C G T A C T G A A C T G A C T G G C T A C G T A A G T C C G T A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A C G T A G A T C C T G A T G C A C G A T

PB0072.1_Sox5_1/Jaspar

Match Rank:9
Score:0.58
Offset:3
Orientation:forward strand
Alignment:GCACAAGGAACAA------
---TTTAGAACAATAAAAT
 C T A G A G T C G T C A A G T C C G T A C T G A A C T G A C T G G C T A C G T A A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G A T G C A T C A G T C T G A C T A G T C G A C G T A A G T C C G T A C G T A G C A T C G T A C T G A C G T A G C T A C G A T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.58
Offset:7
Orientation:reverse strand
Alignment:GCACAAGGAACAA----
-------GAACAATGGN
 C T A G A G T C G T C A A G T C C G T A C T G A A C T G A C T G G C T A C G T A A G T C C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G