Information for 3-RCCAATAAAA (Motif 3)

T C A G A T G C G A T C G T C A C G T A A G C T C G T A C G T A C G T A T G C A
Reverse Opposite:
A C G T C G A T A C G T G C A T T C G A A C G T C A G T C T A G T A C G A G T C
p-value:1e-34
log p-value:-7.956e+01
Information Content per bp:1.652
Number of Target Sequences with motif154.0
Percentage of Target Sequences with motif19.69%
Number of Background Sequences with motif3072.9
Percentage of Background Sequences with motif6.42%
Average Position of motif in Targets50.9 +/- 24.9bp
Average Position of motif in Background50.2 +/- 29.3bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.19
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXD13/MA0909.1/Jaspar

Match Rank:1
Score:0.96
Offset:1
Orientation:forward strand
Alignment:RCCAATAAAA-
-CCAATAAAAA
 T C A G A T G C G A T C G T C A C G T A A G C T C G T A C G T A C G T A T G C A A C G T
A C G T A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:2
Score:0.96
Offset:0
Orientation:forward strand
Alignment:RCCAATAAAA
NCYAATAAAA
 T C A G A T G C G A T C G T C A C G T A A G C T C G T A C G T A C G T A T G C A
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A

HOXB13/MA0901.1/Jaspar

Match Rank:3
Score:0.95
Offset:1
Orientation:forward strand
Alignment:RCCAATAAAA-
-CCAATAAAAC
 T C A G A T G C G A T C G T C A C G T A A G C T C G T A C G T A C G T A T G C A A C G T
A C G T T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C

HOXA13/MA0650.1/Jaspar

Match Rank:4
Score:0.95
Offset:1
Orientation:forward strand
Alignment:RCCAATAAAA-
-CCAATAAAAA
 T C A G A T G C G A T C G T C A C G T A A G C T C G T A C G T A C G T A T G C A A C G T
A C G T T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A

PH0078.1_Hoxd13/Jaspar

Match Rank:5
Score:0.93
Offset:-2
Orientation:forward strand
Alignment:--RCCAATAAAA----
CTACCAATAAAATTCT
 A C G T A C G T T C A G A T G C G A T C G T C A C G T A A G C T C G T A C G T A C G T A T G C A A C G T A C G T A C G T A C G T
G T A C C G A T G C T A A G T C G A T C G C T A C G T A A G C T C G T A C G T A C G T A G C T A G A C T G A C T G T A C G A C T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:6
Score:0.92
Offset:0
Orientation:forward strand
Alignment:RCCAATAAAA
NGCAATTAAA
 T C A G A T G C G A T C G T C A C G T A A G C T C G T A C G T A C G T A T G C A
T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A

CDX1/MA0878.1/Jaspar

Match Rank:7
Score:0.92
Offset:1
Orientation:forward strand
Alignment:RCCAATAAAA
-GCAATAAAA
 T C A G A T G C G A T C G T C A C G T A A G C T C G T A C G T A C G T A T G C A
A C G T T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A

PH0057.1_Hoxb13/Jaspar

Match Rank:8
Score:0.92
Offset:-2
Orientation:forward strand
Alignment:--RCCAATAAAA----
AACCCAATAAAATTCG
 A C G T A C G T T C A G A T G C G A T C G T C A C G T A A G C T C G T A C G T A C G T A T G C A A C G T A C G T A C G T A C G T
T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:9
Score:0.92
Offset:0
Orientation:reverse strand
Alignment:RCCAATAAAA
CCYMATAAAA
 T C A G A T G C G A T C G T C A C G T A A G C T C G T A C G T A C G T A T G C A
T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A

HOXA10/MA0899.1/Jaspar

Match Rank:10
Score:0.92
Offset:0
Orientation:forward strand
Alignment:RCCAATAAAA-
GGTAATAAAAA
 T C A G A T G C G A T C G T C A C G T A A G C T C G T A C G T A C G T A T G C A A C G T
C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A