Information for 13-ADTGATTRAT (Motif 17)

C G T A C A T G C G A T C T A G C G T A C G A T C G A T C T G A C G T A A C G T
Reverse Opposite:
C G T A C G A T A G C T C G T A C G T A A C G T A G T C C G T A G T A C C G A T
p-value:1e-3
log p-value:-9.185e+00
Information Content per bp:1.741
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.77%
Number of Background Sequences with motif44.1
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets35.1 +/- 24.8bp
Average Position of motif in Background54.7 +/- 32.4bp
Strand Bias (log2 ratio + to - strand density)-1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:1
Score:0.86
Offset:2
Orientation:reverse strand
Alignment:ADTGATTRAT--
--TGATTGATGA
 C G T A C A T G C G A T C T A G C G T A C G A T C G A T C T G A C G T A A C G T A C G T A C G T
A C G T A C G T C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:2
Score:0.83
Offset:2
Orientation:forward strand
Alignment:ADTGATTRAT----
--TGATTRATGGCY
 C G T A C A T G C G A T C T A G C G T A C G A T C G A T C T G A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C

PBX1/MA0070.1/Jaspar

Match Rank:3
Score:0.82
Offset:0
Orientation:reverse strand
Alignment:ADTGATTRAT--
TTTGATTGATGN
 C G T A C A T G C G A T C T A G C G T A C G A T C G A T C T G A C G T A A C G T A C G T A C G T
C G A T G C A T C A G T A C T G G T C A C G A T A C G T A C T G C G T A A C G T A C T G C A T G

PB0144.1_Lef1_2/Jaspar

Match Rank:4
Score:0.82
Offset:-2
Orientation:reverse strand
Alignment:--ADTGATTRAT----
NNANTGATTGATNTTN
 A C G T A C G T C G T A C A T G C G A T C T A G C G T A C G A T C G A T C T G A C G T A A C G T A C G T A C G T A C G T A C G T
G C A T C G T A T C G A C A T G G A C T C T A G G T C A G A C T C G A T T A C G C G T A C G A T A T G C A G C T G C A T A T G C

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:5
Score:0.81
Offset:1
Orientation:reverse strand
Alignment:ADTGATTRAT---
-ATGATKGATGRC
 C G T A C A T G C G A T C T A G C G T A C G A T C G A T C T G A C G T A A C G T A C G T A C G T A C G T
A C G T C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C

PB0188.1_Tcf7l2_2/Jaspar

Match Rank:6
Score:0.80
Offset:-2
Orientation:reverse strand
Alignment:--ADTGATTRAT----
NNANTGATTGATNNNN
 A C G T A C G T C G T A C A T G C G A T C T A G C G T A C G A T C G A T C T G A C G T A A C G T A C G T A C G T A C G T A C G T
G C A T C G A T T G C A T A C G G A C T C T A G G T C A G A C T C G A T T C A G C G T A C G A T A T G C A G C T G A C T A T G C

Hoxa9/MA0594.1/Jaspar

Match Rank:7
Score:0.77
Offset:2
Orientation:reverse strand
Alignment:ADTGATTRAT---
--TGATTTATGGC
 C G T A C A T G C G A T C T A G C G T A C G A T C G A T C T G A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T C G A T C T A G G C T A A C G T C G A T A C G T C G T A A G C T C A T G C T A G A T G C

PH0120.1_Nkx6-3/Jaspar

Match Rank:8
Score:0.73
Offset:-3
Orientation:reverse strand
Alignment:---ADTGATTRAT----
CNNANTAATTAATTNNC
 A C G T A C G T A C G T C G T A C A T G C G A T C T A G C G T A C G A T C G A T C T G A C G T A A C G T A C G T A C G T A C G T A C G T
T G A C T C G A T G C A T C G A A C T G G A C T T G C A C G T A G A C T G A C T C T G A G C T A C G A T C G A T C G A T A C G T G A T C

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:9
Score:0.73
Offset:2
Orientation:reverse strand
Alignment:ADTGATTRAT----
--TGATTTATGGCC
 C G T A C A T G C G A T C T A G C G T A C G A T C G A T C T G A C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G A T C T A G G C T A C G A T C A G T A C G T G T C A A G C T C A T G T C A G A G T C A G T C

PH0118.1_Nkx6-1_1/Jaspar

Match Rank:10
Score:0.73
Offset:-3
Orientation:reverse strand
Alignment:---ADTGATTRAT----
CNNAGTAATTAATTNNC
 A C G T A C G T A C G T C G T A C A T G C G A T C T A G C G T A C G A T C G A T C T G A C G T A A C G T A C G T A C G T A C G T A C G T
T A G C T C A G T C G A C T G A C A T G G A C T G T C A C G T A C G A T C G A T C T G A G C T A C G A T G C A T C G A T A C G T G A T C