Information for 12-CTAAATCAAC (Motif 16)

A G T C A C G T C G T A C G T A C G T A A C G T A G T C C G T A C G T A A G T C
Reverse Opposite:
A C T G A C G T A C G T A C T G C G T A A C G T A C G T A C G T C G T A A C T G
p-value:1e-6
log p-value:-1.415e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.51%
Number of Background Sequences with motif4.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets55.2 +/- 21.8bp
Average Position of motif in Background72.4 +/- 6.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0026.1_Duxbl/Jaspar

Match Rank:1
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---CTAAATCAAC----
CGACCCAATCAACGGTG
 A C G T A C G T A C G T A G T C A C G T C G T A C G T A C G T A A C G T A G T C C G T A C G T A A G T C A C G T A C G T A C G T A C G T
A G T C C T A G C T G A A G T C A G T C A G T C G T C A G T C A A G C T A G T C C G T A C T G A A G T C T A C G T C A G G C A T T A C G

Hoxc9/MA0485.1/Jaspar

Match Rank:2
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----CTAAATCAAC
GGCCATAAATCAC-
 A C G T A C G T A C G T A C G T A G T C A C G T C G T A C G T A C G T A A C G T A G T C C G T A C G T A A G T C
C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C A C G T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:3
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----CTAAATCAAC
GGCCATAAATCA--
 A C G T A C G T A C G T A C G T A G T C A C G T C G T A C G T A C G T A A C G T A G T C C G T A C G T A A G T C
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A A C G T A C G T

Gfi1/MA0038.1/Jaspar

Match Rank:4
Score:0.67
Offset:1
Orientation:forward strand
Alignment:CTAAATCAAC-
-CAAATCACTG
 A G T C A C G T C G T A C G T A C G T A A C G T A G T C C G T A C G T A A G T C A C G T
A C G T A G T C T G C A C G T A C G T A C A G T G T A C G C T A T A G C G C A T T A C G

Hoxa9/MA0594.1/Jaspar

Match Rank:5
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---CTAAATCAAC
GCCATAAATCA--
 A C G T A C G T A C G T A G T C A C G T C G T A C G T A C G T A A C G T A G T C C G T A C G T A A G T C
T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A A C G T A C G T

PH0037.1_Hdx/Jaspar

Match Rank:6
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----CTAAATCAAC---
AAGGCGAAATCATCGCA
 A C G T A C G T A C G T A C G T A G T C A C G T C G T A C G T A C G T A A C G T A G T C C G T A C G T A A G T C A C G T A C G T A C G T
C G T A C T G A A C T G C A T G G T A C C T A G T G C A C G T A C G T A A C G T A T G C G C T A G A C T G A T C A T C G G T A C T G C A

FOXH1/MA0479.1/Jaspar

Match Rank:7
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CTAAATCAAC-
TCCAATCCACA
 A G T C A C G T C G T A C G T A C G T A A C G T A G T C C G T A C G T A A G T C A C G T
A G C T A G T C T A G C C G T A C G T A A C G T G T A C G T A C C G T A A G T C C G T A

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:8
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CTAAATCAAC
HNRAATCAAT
 A G T C A C G T C G T A C G T A C G T A A C G T A G T C C G T A C G T A A G T C
G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CTAAATCAAC---
-SSAATCCACANN
 A G T C A C G T C G T A C G T A C G T A A C G T A G T C C G T A C G T A A G T C A C G T A C G T A C G T
A C G T A T G C T A G C C T G A C G T A A C G T G T A C G T A C C T G A A G T C C G T A C T G A G T A C

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:10
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----CTAAATCAAC
GGCCATAAATCA--
 A C G T A C G T A C G T A C G T A G T C A C G T C G T A C G T A C G T A A C G T A G T C C G T A C G T A A G T C
C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A A C G T A C G T