Information for 11-CAGCCAAGAA (Motif 15)

A G T C C G T A A T C G A G T C G T A C C G T A C T G A C A T G C G T A C G T A
Reverse Opposite:
A C G T A C G T G T A C A G C T A C G T A C T G A C T G A T G C C G A T A C T G
p-value:1e-7
log p-value:-1.763e+01
Information Content per bp:1.864
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif1.92%
Number of Background Sequences with motif141.1
Percentage of Background Sequences with motif0.29%
Average Position of motif in Targets42.4 +/- 28.1bp
Average Position of motif in Background48.2 +/- 24.1bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL004.1_CCAAT-box/Jaspar

Match Rank:1
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--CAGCCAAGAA
ACTAGCCAATCA
 A C G T A C G T A G T C C G T A A T C G A G T C G T A C C G T A C T G A C A T G C G T A C G T A
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

NFIC/MA0161.1/Jaspar

Match Rank:2
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:CAGCCAAGAA
-TGCCAA---
 A G T C C G T A A T C G A G T C G T A C C G T A C T G A C A T G C G T A C G T A
A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCAAGAA
BCAGACWA---
 A C G T A G T C C G T A A T C G A G T C G T A C C G T A C T G A C A T G C G T A C G T A
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CAGCCAAGAA
CGTGCCAAG--
 A C G T A G T C C G T A A T C G A G T C G T A C C G T A C T G A C A T G C G T A C G T A
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T

PH0057.1_Hoxb13/Jaspar

Match Rank:5
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CAGCCAAGAA------
AACCCAATAAAATTCG
 A G T C C G T A A T C G A G T C G T A C C G T A C T G A C A T G C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
T G C A C T G A G T A C A G T C G A T C G C T A C T G A A G C T C G T A C G T A G C T A T G C A G C A T G C A T G A T C T A C G

HOXB13/MA0901.1/Jaspar

Match Rank:6
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CAGCCAAGAA---
---CCAATAAAAC
 A G T C C G T A A T C G A G T C G T A C C G T A C T G A C A T G C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C

NFY(CCAAT)/Promoter/Homer

Match Rank:7
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CAGCCAAGAA-
-AGCCAATCGG
 A G T C C G T A A T C G A G T C G T A C C G T A C T G A C A T G C G T A C G T A A C G T
A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

HOXA13/MA0650.1/Jaspar

Match Rank:8
Score:0.59
Offset:3
Orientation:forward strand
Alignment:CAGCCAAGAA---
---CCAATAAAAA
 A G T C C G T A A T C G A G T C G T A C C G T A C T G A C A T G C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A

NFIA/MA0670.1/Jaspar

Match Rank:9
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CAGCCAAGAA
GGTGCCAAGT-
 A C G T A G T C C G T A A T C G A G T C G T A C C G T A C T G A C A T G C G T A C G T A
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T

NFYB/MA0502.1/Jaspar

Match Rank:10
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----CAGCCAAGAA-
AAATGGACCAATCAG
 A C G T A C G T A C G T A C G T A G T C C G T A A T C G A G T C G T A C C G T A C T G A C A T G C G T A C G T A A C G T
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G