Information for 3-MGYMATAAAA (Motif 3)

G T C A A T C G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A
Reverse Opposite:
C G A T A C G T A C G T C G A T C G T A A C G T C A T G C T G A A T G C C A G T
p-value:1e-38
log p-value:-8.958e+01
Information Content per bp:1.767
Number of Target Sequences with motif155.0
Percentage of Target Sequences with motif19.47%
Number of Background Sequences with motif2757.7
Percentage of Background Sequences with motif5.84%
Average Position of motif in Targets54.9 +/- 25.6bp
Average Position of motif in Background49.7 +/- 28.7bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.16
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:1
Score:0.96
Offset:0
Orientation:forward strand
Alignment:MGYMATAAAA
NCYAATAAAA
 G T C A A T C G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A

HOXD13/MA0909.1/Jaspar

Match Rank:2
Score:0.95
Offset:1
Orientation:forward strand
Alignment:MGYMATAAAA-
-CCAATAAAAA
 G T C A A T C G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A A C G T
A C G T A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A

HOXA10/MA0899.1/Jaspar

Match Rank:3
Score:0.95
Offset:0
Orientation:forward strand
Alignment:MGYMATAAAA-
GGTAATAAAAA
 G T C A A T C G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A A C G T
C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:4
Score:0.95
Offset:1
Orientation:forward strand
Alignment:MGYMATAAAA-
-GTCATAAAAN
 G T C A A T C G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A A C G T
A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T

CDX1/MA0878.1/Jaspar

Match Rank:5
Score:0.95
Offset:1
Orientation:forward strand
Alignment:MGYMATAAAA
-GCAATAAAA
 G T C A A T C G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A
A C G T T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A

CDX2/MA0465.1/Jaspar

Match Rank:6
Score:0.93
Offset:-1
Orientation:forward strand
Alignment:-MGYMATAAAA
AAGCCATAAAA
 A C G T G T C A A T C G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A

PH0064.1_Hoxb9/Jaspar

Match Rank:7
Score:0.93
Offset:-2
Orientation:forward strand
Alignment:--MGYMATAAAA----
AGAGCCATAAAATTCG
 A C G T A C G T G T C A A T C G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:8
Score:0.93
Offset:0
Orientation:forward strand
Alignment:MGYMATAAAA
NGCAATTAAA
 G T C A A T C G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A
T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A

Hoxd9/MA0913.1/Jaspar

Match Rank:9
Score:0.93
Offset:1
Orientation:forward strand
Alignment:MGYMATAAAA-
-GCAATAAAAA
 G T C A A T C G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A A C G T
A C G T T C A G G A T C T G C A C T G A C G A T G C T A G C T A G C T A C G T A G C T A

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:10
Score:0.91
Offset:0
Orientation:reverse strand
Alignment:MGYMATAAAA
CCYMATAAAA
 G T C A A T C G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A
T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A