Information for 5-CCAAACCAGT (Motif 12)

A G T C A G T C G T C A T G C A C T G A A T G C T G A C C T G A C T A G C A G T
Reverse Opposite:
G T C A G A T C G A C T A C T G T A C G G A C T A C G T C A G T T C A G T C A G
p-value:1e-13
log p-value:-3.087e+01
Information Content per bp:1.571
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif2.14%
Number of Background Sequences with motif75.9
Percentage of Background Sequences with motif0.16%
Average Position of motif in Targets62.3 +/- 21.7bp
Average Position of motif in Background50.3 +/- 27.2bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TFCP2/MA0145.3/Jaspar

Match Rank:1
Score:0.64
Offset:2
Orientation:forward strand
Alignment:CCAAACCAGT--
--AAACCGGTTT
 A G T C A G T C G T C A T G C A C T G A A T G C T G A C C T G A C T A G C A G T A C G T A C G T
A C G T A C G T T C G A C G T A C G T A T A G C G A T C C T A G A T C G G C A T G A C T G A C T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:2
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CCAAACCAGT--
--ATGCCAGACN
 A G T C A G T C G T C A T G C A C T G A A T G C T G A C C T G A C T A G C A G T A C G T A C G T
A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

POL004.1_CCAAT-box/Jaspar

Match Rank:3
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CCAAACCAGT--
ACTAGCCAATCA
 A G T C A G T C G T C A T G C A C T G A A T G C T G A C C T G A C T A G C A G T A C G T A C G T
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

GRHL1/MA0647.1/Jaspar

Match Rank:4
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CCAAACCAGT---
-AAAACCGGTTTT
 A G T C A G T C G T C A T G C A C T G A A T G C T G A C C T G A C T A G C A G T A C G T A C G T A C G T
A C G T G T C A C G T A C T G A C G T A A G T C G T A C C T A G A T C G G C A T G A C T G C A T C G A T

PH0040.1_Hmbox1/Jaspar

Match Rank:5
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CCAAACCAGT----
GANGTTAACTAGTTTNN
 A C G T A C G T A C G T A G T C A G T C G T C A T G C A C T G A A T G C T G A C C T G A C T A G C A G T A C G T A C G T A C G T A C G T
T A C G G C T A G C A T T C A G G C A T G C A T C G T A G T C A A G T C A G C T G T C A T C A G G C A T G A C T G A C T C G A T A G T C

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:6
Score:0.56
Offset:2
Orientation:forward strand
Alignment:CCAAACCAGT--
--AAACCACANN
 A G T C A G T C G T C A T G C A C T G A A T G C T G A C C T G A C T A G C A G T A C G T A C G T
A C G T A C G T G C T A C T G A T C G A A G T C A G T C C T G A A G T C G T C A C T G A T G C A

PB0121.1_Foxj3_2/Jaspar

Match Rank:7
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----CCAAACCAGT---
AACACCAAAACAAAGGA
 A C G T A C G T A C G T A C G T A G T C A G T C G T C A T G C A C T G A A T G C T G A C C T G A C T A G C A G T A C G T A C G T A C G T
G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CCAAACCAGT---
-CACAGCAGGGGG
 A G T C A G T C G T C A T G C A C T G A A T G C T G A C C T G A C T A G C A G T A C G T A C G T A C G T
A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:9
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CCAAACCAGT-
-NAAACCACAG
 A G T C A G T C G T C A T G C A C T G A A T G C T G A C C T G A C T A G C A G T A C G T
A C G T T A G C G C T A T C G A C T G A A G T C A G T C C T G A A G T C C G T A C T A G

NFYB/MA0502.1/Jaspar

Match Rank:10
Score:0.54
Offset:-6
Orientation:forward strand
Alignment:------CCAAACCAGT
AAATGGACCAATCAG-
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C G T C A T G C A C T G A A T G C T G A C C T G A C T A G C A G T
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G A C G T