Information for 3-CASCTTGTAAATC (Motif 4)

G T A C C G T A T A G C A G T C C G A T C G A T C T A G A C G T G T C A C G T A G C T A A C G T A T G C
Reverse Opposite:
T A C G T C G A C A G T A C G T A C G T T C G A A G T C C G T A C G T A A C T G A T C G G C A T C A T G
p-value:1e-14
log p-value:-3.361e+01
Information Content per bp:1.692
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif2.46%
Number of Background Sequences with motif59.6
Percentage of Background Sequences with motif0.21%
Average Position of motif in Targets53.1 +/- 29.1bp
Average Position of motif in Background51.8 +/- 29.2bp
Strand Bias (log2 ratio + to - strand density)-0.9
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXC13/MA0907.1/Jaspar

Match Rank:1
Score:0.71
Offset:2
Orientation:forward strand
Alignment:CASCTTGTAAATC
--GCTCGTAAAAA
 G T A C C G T A T A G C A G T C C G A T C G A T C T A G A C G T G T C A C G T A G C T A A C G T A T G C
A C G T A C G T A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A

PH0048.1_Hoxa13/Jaspar

Match Rank:2
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-CASCTTGTAAATC--
AAACCTCGTAAAATTT
 A C G T G T A C C G T A T A G C A G T C C G A T C G A T C T A G A C G T G T C A C G T A G C T A A C G T A T G C A C G T A C G T
G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T

PH0068.1_Hoxc13/Jaspar

Match Rank:3
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-CASCTTGTAAATC--
AAAGCTCGTAAAATTT
 A C G T G T A C C G T A T A G C A G T C C G A T C G A T C T A G A C G T G T C A C G T A G C T A A C G T A T G C A C G T A C G T
G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:4
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CASCTTGTAAATC
--CCYMATAAAA-
 G T A C C G T A T A G C A G T C C G A T C G A T C T A G A C G T G T C A C G T A G C T A A C G T A T G C
A C G T A C G T T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:5
Score:0.62
Offset:2
Orientation:forward strand
Alignment:CASCTTGTAAATC-
--NGYCATAAAWCH
 G T A C C G T A T A G C A G T C C G A T C G A T C T A G A C G T G T C A C G T A G C T A A C G T A T G C A C G T
A C G T A C G T T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:6
Score:0.60
Offset:3
Orientation:forward strand
Alignment:CASCTTGTAAATC--
---TATGCWAATBAV
 G T A C C G T A T A G C A G T C C G A T C G A T C T A G A C G T G T C A C G T A G C T A A C G T A T G C A C G T A C G T
A C G T A C G T A C G T G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

TATA-Box(TBP)/Promoter/Homer

Match Rank:7
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CASCTTGTAAATC-
--CCTTTTATAGNC
 G T A C C G T A T A G C A G T C C G A T C G A T C T A G A C G T G T C A C G T A G C T A A C G T A T G C A C G T
A C G T A C G T A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C

NFAT5/MA0606.1/Jaspar

Match Rank:8
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:CASCTTGTAAATC
---NATGGAAAAN
 G T A C C G T A T A G C A G T C C G A T C G A T C T A G A C G T G T C A C G T A G C T A A C G T A T G C
A C G T A C G T A C G T G C T A C T G A C G A T T C A G C T A G C G T A C G T A C G T A C G T A A C G T

NFATC2/MA0152.1/Jaspar

Match Rank:9
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:CASCTTGTAAATC
-----TGGAAAA-
 G T A C C G T A T A G C A G T C C G A T C G A T C T A G A C G T G T C A C G T A G C T A A C G T A T G C
A C G T A C G T A C G T A C G T A C G T C G A T A C T G A C T G C G T A C G T A T C G A G C T A A C G T

POU2F2/MA0507.1/Jaspar

Match Rank:10
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:CASCTTGTAAATC--
--ATATGCAAATNNN
 G T A C C G T A T A G C A G T C C G A T C G A T C T A G A C G T G T C A C G T A G C T A A C G T A T G C A C G T A C G T
A C G T A C G T C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A